Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3382 ATGGACCGCCGTGTTCGTACCAACCCATTTCTCTCCGAGCAAGAAGATCTCGATGCCACGTCGGAGCCGGAATCCCCCTCCGACGCCAATGATTCTAAACCCGCCGCCGGTCCTCCGCCCAAAAAAAGTAGAAGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGGGAAACATATCCACCGTCCGATTCGTGGGCTTGGAGGAAATACGGGCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGTTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGCGTGGACCCCACAAAGCTCGTTATCACCTACGCCTTCGACCACAACCACCAGCTCCCGACCACCAAATCTCACCACCACAATTCCACGCCGTCCTCCGCCGCCATCGCCGCCGCAGCCGCTGCCGGGGAATCATCGCCGGGAAGCACAACCCCGTCGTCCTCCACCTCCTCCGGCGACCACGCCAACGCCGCCACCCTCTCGTCGCCGTCGAAGTTCGAGGAGGCGGCGGCGGTTTTCGCGAGCCAACCGGAGCTGGAACTCGGCGGCGACTCGCTGATGATAAAACCGTGCATCGGCGACTTTGGGTGGCTGGCTGACGTGGCGTACGACAGAATCATGGAGGGCCCGATTTTTGGGGGAGGCGGCGATGTATTCGACGACGCCGATGTAATGGTTTTGTCGACGAGAGGAGATGACGTGGACGAGTCGTTATTTGCGGATCTCGGGGAATTACCCGAAGGGACTGTGATTTTTGGGCGGAGGAGACCGGTCCAACCGGACGGACCGAACCGGACGCGTGGCAGGGTTTTCTGA 873 59.11 MDRRVRTNPFLSEQEDLDATSEPESPSDANDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPTTKSHHHNSTPSSAAIAAAAAAGESSPGSTTPSSSTSSGDHANAATLSSPSKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRIMEGPIFGGGGDVFDDADVMVLSTRGDDVDESLFADLGELPEGTVIFGRRRPVQPDGPNRTRGRVF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43815880 43818952 - Sed0000458.1 Sed04g3382 711985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3382 290 Gene3D WRKY domain 58 133 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3382 290 MobiDBLite consensus disorder prediction 1 111 - -
Sed04g3382 290 MobiDBLite consensus disorder prediction 131 180 - -
Sed04g3382 290 ProSiteProfiles WRKY domain profile. 72 132 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3382 290 SUPERFAMILY WRKY DNA-binding domain 67 132 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3382 290 MobiDBLite consensus disorder prediction 156 180 - -
Sed04g3382 290 Pfam WRKY DNA -binding domain 73 130 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3382 290 MobiDBLite consensus disorder prediction 131 147 - -
Sed04g3382 290 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 21 188 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3382 290 SMART WRKY_cls 71 131 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3382 290 FunFam WRKY transcription factor 65 58 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3382 Sed-Chr4:43815880 Sed10g0042 Sed-Chr10:271357 4.00E-30 dispersed
Sed04g3382 Sed-Chr4:43815880 Sed04g3383 Sed-Chr4:43815880 6.00E-143 tandem
Sed01g2171 Sed-Chr1:16361670 Sed04g3382 Sed-Chr4:43815880 1.00E-40 wgd
Sed04g3382 Sed-Chr4:43815880 Sed05g1905 Sed-Chr5:32418315 1.20E-95 wgd
Sed04g3382 Sed-Chr4:43815880 Sed08g2207 Sed-Chr8:35866387 3.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38340 PF03106 WRKY 1.10E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3382 - - - 0.0