Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3383 ATGGACCGCCGTGTTCGTACCAACCCATTTCTCTCCGAGCAAGAAGATCTCGATGCCACGTCGGAGCCGGAATCCCCCTCCGACGCCAATGATTCTAAACCCGCCGCCGGTCCTCCGCCCAAAAAAAGAAGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGGGAAACATATCCACCGTCCGATTCGTGGGCTTGGAGGAAATACGGGCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGTTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGCGTGGACCCCACAAAGCTCGTTATCACCTACGCCTTCGACCACAACCACCAGCTCCCGACCACCAAATCTCACCACCACAATTCCACGCCGTCCTCCGCCGCCATCGCCGCCGCAGCCGCTGCCGGGGAATCATCGCCGGGAAGCACAACCCCGTCGTCCTCCACCTCCTCCGGCGACCACGCCAACGCCGCCACCCTCTCGTCGCCGTCGAAGTTCGAGGAGGCGGCGGCGGTTTTCGCGAGCCAACCGGAGCTGGAACTCGGCGGCGACTCGCTGATGATAAAACCGTGCATCGGCGACTTTGGGTGGCTGGCTGACGTGGCGTACGACAGAATCATGGAGGGCCCGATTTTTGGGGGAGGCGGCGATGTATTCGACGACGCCGATGTAATGGTTTTGTCGACGAGAGGAGATGACGTGGACGAGTCGTTATTTGCGGATCTCGGGGAATTACCCGAAGGGACTGTGATTTTTGGGCGGAGGAGACCGGTCCAACCGGACGGACCGAACCGGACGCGTGGCAGGGTTTTCTGA 870 59.2 MDRRVRTNPFLSEQEDLDATSEPESPSDANDSKPAAGPPPKKRRGVQKRVVSVPIGDVEGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPTTKSHHHNSTPSSAAIAAAAAAGESSPGSTTPSSSTSSGDHANAATLSSPSKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRIMEGPIFGGGGDVFDDADVMVLSTRGDDVDESLFADLGELPEGTVIFGRRRPVQPDGPNRTRGRVF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43815880 43818952 - Sed0000458.2 Sed04g3383 711986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3383 289 FunFam WRKY transcription factor 65 57 131 - -
Sed04g3383 289 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 21 187 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3383 289 MobiDBLite consensus disorder prediction 155 179 - -
Sed04g3383 289 MobiDBLite consensus disorder prediction 130 146 - -
Sed04g3383 289 ProSiteProfiles WRKY domain profile. 71 131 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3383 289 SMART WRKY_cls 70 130 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3383 289 MobiDBLite consensus disorder prediction 130 179 - -
Sed04g3383 289 SUPERFAMILY WRKY DNA-binding domain 66 131 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3383 289 Pfam WRKY DNA -binding domain 72 129 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3383 289 MobiDBLite consensus disorder prediction 1 110 - -
Sed04g3383 289 Gene3D WRKY domain 57 132 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2171 Sed-Chr1:16361670 Sed04g3383 Sed-Chr4:43815880 6.50E-40 dispersed
Sed04g3383 Sed-Chr4:43815880 Sed05g1905 Sed-Chr5:32418315 1.90E-96 dispersed
Sed04g3382 Sed-Chr4:43815880 Sed04g3383 Sed-Chr4:43815880 6.00E-143 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38341 PF03106 WRKY 1.10E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3383 - - - 0.0