Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3392 ATGGCGTCCATTTCCTATCTTCTTATTGTTCTTTCCCTCTTAGCCTTCTCAGCCAATGCTCAGCTCTCACCTAACTTCTACGCTAGAAGCTGTCCCAAACTCCCACAAATTGTTCGCTCTGGTATGATCAAAGCAGTTAATCGAGAAAAACGTCTTGCCGCTTCGATCCTTCGCTTGTTCTTCCACGATTGTTTCGTTAATGGTTGTGATGGTGGTATATTGCTGGATGATACGCCAACATTTACAGGCGAAAAGAATGCATTTCCAAACAAGAACTCAGCCAGAGGGTTTGAAGTGATTGACGATATTAAAACTCAGGTGGAAGCTGCTTGTAAAGCCACTGTTTCATGTGCTGATATTCTTGCTCTTGCCACTCGCGATGGGGTCAATTTGCTTGGAGGTCCTAGTTGGAATGTACCACTTGGTCGAAAGGACTCGAGGACTGCGAGCGAAAGTGGAGCTAATAGCAACCTTCCGGGGCCAGCCTCCAGCCTCTCAACACTCATTTCGATGTTCAGTGCCCAGGGCTTGAACGCCCGCGATATGACTGCCCTCTCGGGCGCCCACACCATCGGCATGGCCAATTGTCAATTCTTCCGAACCCGCATCTACAACGAGACTAACATTGACCCTGCCTTCGCCCAACAGCGGAGAGCGAATTGCCCGTTCACTGGAGGTGACACCAATTTGGCCCCGCTCGACTCAACCACCAACCGTTTCGACAACCAATATTACGTTGACCTAAAGAGTAAACGCGGCCTGTTTCATTCAGACCAAGAGCTCTTCAACAACGGCTCCCAAGATGCATTGGTTCAAACTTACAGTACAAATCCTGCAGCCTTTAAAACGGATTTTGTTAACGCGATGATTAAGATGGGAAATCTCAGTCCTCCGGCTGGGGCTGCTACTGAGATTAGATTGAACTGCAGGGTGGTTAATTAA 942 48.3 MASISYLLIVLSLLAFSANAQLSPNFYARSCPKLPQIVRSGMIKAVNREKRLAASILRLFFHDCFVNGCDGGILLDDTPTFTGEKNAFPNKNSARGFEVIDDIKTQVEAACKATVSCADILALATRDGVNLLGGPSWNVPLGRKDSRTASESGANSNLPGPASSLSTLISMFSAQGLNARDMTALSGAHTIGMANCQFFRTRIYNETNIDPAFAQQRRANCPFTGGDTNLAPLDSTTNRFDNQYYVDLKSKRGLFHSDQELFNNGSQDALVQTYSTNPAAFKTDFVNAMIKMGNLSPPAGAATEIRLNCRVVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43858200 43860775 - Sed0022636.1 Sed04g3392 711995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3392 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Sed04g3392 313 Gene3D - 25 310 - -
Sed04g3392 313 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 Gene3D Peroxidase, domain 2 159 292 - -
Sed04g3392 313 Pfam Peroxidase 38 277 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 SUPERFAMILY Heme-dependent peroxidases 21 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 ProSiteProfiles Plant heme peroxidase family profile. 21 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Sed04g3392 313 PANTHER PEROXIDASE 72-RELATED 10 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3392 313 FunFam Peroxidase 25 166 - -
Sed04g3392 313 CDD secretory_peroxidase 21 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed04g3392 313 FunFam Peroxidase 159 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3392 Sed-Chr4:43858200 Sed05g1910 Sed-Chr5:32470424 2.50E-150 dispersed
Sed04g3392 Sed-Chr4:43858200 Sed05g1909 Sed-Chr5:32465460 5.00E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3392 K00430 - csv:101208932 508.064