Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3409 ATGGCTTCCTCCAAACATCGCGAGAACTTCGTCTACATCGCCAAGCTGGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGATTCAATGAAGAAAGTTGCAAAGCTTGATGTCGAACTGACGGTTGAGGAAAGAAATTTGCTCTCTGTTGGATACAAGAATGTGGTTGGTGCAAGGAGAGCCTCATGGAGGATTTTGTCGTCGATAGAGCAGAAAGAAGAATCTAAAGGCAATGAAATAAACGCAAAGCGCATCAAGGAATACCGACAAAAGGTTGAATCCGAGCTCTCTGGTATTTGTAATGATATCATGACAGTGATCGACGAGCACCTAATCCCCTCAGCTTCAGCTGGGGAATCGACAGTGTTCTACTATAAGATGAAAGGAGATTATTATCGTTACCTTGCAGAATTTACATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGGTAGCATATGAGGCTGCAACCAACTCAGCCGAATCTGAATTATCTCCTACGCATCCGATCCGCTTGGGTTTGGCATTAAATTTCTCAGTCTTCTATTATGAAATTTTGAATTCACCTGAAAGGGCCTGCCACCTGGCAAAGCAAGCTTTTGATGAAGCCATCTCTGAACTTGATACCCTTAATGAGGATTCATACAAAGATAGCACCTTAATCATGCAGCTTCTTAGGGACAACCTCACATTATGGAATTCTGACATCCCAGAGGATGGAGATGATGCCCCAAAGGTCAATGGCACTGCCAAGGTTACTGGGGGTGACGATGAGTGA 783 44.32 MASSKHRENFVYIAKLAEQAERYDEMVDSMKKVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEESKGNEINAKRIKEYRQKVESELSGICNDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFTSGNEKKDAADQSMVAYEAATNSAESELSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEDSYKDSTLIMQLLRDNLTLWNSDIPEDGDDAPKVNGTAKVTGGDDE 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43951037 43954933 + Sed0026457.1 Sed04g3409 712012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3409 260 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Sed04g3409 260 Pfam 14-3-3 protein 14 235 IPR023410 -
Sed04g3409 260 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Sed04g3409 260 FunFam 14-3-3 protein epsilon 2 248 - -
Sed04g3409 260 PIRSF 14-3-3 1 247 IPR000308 -
Sed04g3409 260 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Sed04g3409 260 MobiDBLite consensus disorder prediction 237 260 - -
Sed04g3409 260 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Sed04g3409 260 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Sed04g3409 260 Gene3D - 1 249 IPR036815 -
Sed04g3409 260 SMART 1433_4 7 248 IPR023410 -
Sed04g3409 260 Coils Coil 13 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3409 Sed-Chr4:43951037 Sed07g1991 Sed-Chr7:34846116 2.00E-105 dispersed
Sed04g3409 Sed-Chr4:43951037 Sed05g1920 Sed-Chr5:32568589 9.00E-130 wgd
Sed04g3409 Sed-Chr4:43951037 Sed05g1920 Sed-Chr5:32568589 9.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3409 K06630 - csv:101208446 479.944