Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3433 ATGACTCTCGATCACTCTTCCGACCAAATACGCAGTTCCGTCGAAGCCGATGATGATTCCGACGATCTCCTTCCTACTCTTTCCACGGCGGCTGTCGTCAACGGACCGGACGGCGAGAATGCCGGCGACGACCTCTTCGTCCCTCCCTTGAACTTCGCCGTCGTTGACAATGGCGTTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCCATTATATGTCTTTGTCCTGAACCATATCCTGAGGCGAGCTTGGATTTTCTCAAGTTGAATGGGATTCGATTGATTCAATTCGGGATTGAAGGTACTAAGGCTGGTTCAAACAAGGTTGGTGCATATGTAAACTTGATTCTCGAGTGTATGAGGGATTTGGATATGAGCGCTGATCAAATGTACAATTTGGAGCCTTTTGTGAACATCCCAGACGATGCAATTCGTGAAGCGCTTAAAGTTATTCTTGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTAGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCCTCAGTTTTTGATGAGTACCAGCGGTTTGCCGCTGCAAAGGCAAGGATTTCAGATCAAAGGTTCATTGAACTGTTCGACGTTTCGGGCTTGAAGCATCTGCCATCTTCATTTTCTTGTTCCAAAAGGTAA 717 47.42 MTLDHSSDQIRSSVEADDDSDDLLPTLSTAAVVNGPDGENAGDDLFVPPLNFAVVDNGVFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASLDFLKLNGIRLIQFGIEGTKAGSNKVGAYVNLILECMRDLDMSADQMYNLEPFVNIPDDAIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARISDQRFIELFDVSGLKHLPSSFSCSKR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44101419 44105461 - Sed0028165.1 Sed04g3433 712036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3433 238 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 232 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed04g3433 238 Pfam Tyrosine phosphatase family 47 227 IPR004861 -
Sed04g3433 238 CDD PFA-DSP_Siw14 45 222 - -
Sed04g3433 238 MobiDBLite consensus disorder prediction 1 22 - -
Sed04g3433 238 Gene3D Protein tyrosine phosphatase superfamily 45 225 IPR029021 -
Sed04g3433 238 ProSitePatterns Tyrosine specific protein phosphatases active site. 171 181 IPR016130 GO:0016311(InterPro)
Sed04g3433 238 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 222 IPR029021 -
Sed04g3433 238 ProSiteProfiles Dual specificity protein phosphatase domain profile. 51 235 IPR020422 GO:0006470(InterPro)
Sed04g3433 238 PRINTS Plant and fungal dual specificity phosphatase signature 149 163 IPR020428 GO:0016791(InterPro)
Sed04g3433 238 PRINTS Plant and fungal dual specificity phosphatase signature 83 96 IPR020428 GO:0016791(InterPro)
Sed04g3433 238 PRINTS Plant and fungal dual specificity phosphatase signature 46 63 IPR020428 GO:0016791(InterPro)
Sed04g3433 238 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3433 Sed-Chr4:44101419 Sed05g1893 Sed-Chr5:32353316 3.10E-97 dispersed
Sed04g3433 Sed-Chr4:44101419 Sed04g3434 Sed-Chr4:44101419 2.00E-99 tandem
Sed01g0708 Sed-Chr1:5188054 Sed04g3433 Sed-Chr4:44101419 4.90E-78 wgd
Sed04g3433 Sed-Chr4:44101419 Sed05g3223 Sed-Chr5:41876659 4.30E-78 wgd
Sed04g3433 Sed-Chr4:44101419 Sed05g1892 Sed-Chr5:32353316 7.50E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3433 K18045 - csv:101209768 332.028