Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3441 | ATGAGGAAGAGGGAAAGGGAGAACCCTTGTGGGGTTTGTGGGCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGTGTTCCTGCTTCATCGGAGAAGACTTCGTTGCAAGTTAGTGCGTTTCCGTCTGAGATCTTGCCGGAGTTTCTCTATTTGGGAAGCTATGATAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAATACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGACAAGACCTTACCTTTTGATGAAGCAGTTGAATTTCTAGAGCAATGTGAAAAAGACAAGGCTCGTGTTCTGGTGCATTGCATGTCAGGAAAAAACAGGTCCCCATCTATTGTTATTGCGTTCTTGATGAAATGCAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGACCATCCGTGGACTTAACTGAGCCTGTCTATCAGCAGCTGCAAGAGTATGAGCTGAAGGTTTTTGGATCAGCAGAAAACTCCCTCCCAACCATGCCAATCTTCCCTTCGGTTGGTCTGCCTTCTTTTAGCTTTGGCTTCCCAAAGACCAACGACCCGGTTTCGATAACTCCATTCAACAACCTCGGTGCGGCATCAATATTTTCCCGCCCTACTGTAGATGTACCTTCCCATGAGTTTACATTCGGTGCTGGCCAGACTCAAACCAGTTTTGCCGCAGGCCCCTTCGGCACAAATCCACAAAACTCAACCAGCAGCAACATCTAA | 804 | 46.39 | MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPASSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDEAVEFLEQCEKDKARVLVHCMSGKNRSPSIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPVYQQLQEYELKVFGSAENSLPTMPIFPSVGLPSFSFGFPKTNDPVSITPFNNLGAASIFSRPTVDVPSHEFTFGAGQTQTSFAAGPFGTNPQNSTSSNI | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 44165482 | 44169299 | - | Sed0025216.1 | Sed04g3441 | 712044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3441 | 267 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 124 | 134 | IPR016130 | GO:0016311(InterPro) | |
Sed04g3441 | 267 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 103 | 171 | IPR000387 | GO:0016311(InterPro) | |
Sed04g3441 | 267 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 47 | 181 | IPR029021 | - | |
Sed04g3441 | 267 | Gene3D | Protein tyrosine phosphatase superfamily | 40 | 187 | IPR029021 | - | |
Sed04g3441 | 267 | CDD | DSP_plant_IBR5-like | 47 | 176 | - | - | |
Sed04g3441 | 267 | SMART | dsp_5 | 46 | 179 | IPR020422 | GO:0006470(InterPro) | |
Sed04g3441 | 267 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 46 | 182 | IPR020422 | GO:0006470(InterPro) | |
Sed04g3441 | 267 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE IBR5 | 1 | 265 | IPR044212 | GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(PANTHER)|GO:0033549(InterPro)|GO:0043407(InterPro) | |
Sed04g3441 | 267 | FunFam | Protein-tyrosine-phosphatase IBR5 | 36 | 186 | - | - | |
Sed04g3441 | 267 | Pfam | Dual specificity phosphatase, catalytic domain | 55 | 177 | IPR000340 | GO:0016311(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3441 | Sed-Chr4:44165482 | Sed04g3442 | Sed-Chr4:44165482 | 5.50E-151 | tandem | |
Sed04g3441 | Sed-Chr4:44165482 | Sed05g1887 | Sed-Chr5:32296541 | 3.10E-133 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3441 | K04459 | - | csv:101211000 | 500.36 |