Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3441 ATGAGGAAGAGGGAAAGGGAGAACCCTTGTGGGGTTTGTGGGCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGTGTTCCTGCTTCATCGGAGAAGACTTCGTTGCAAGTTAGTGCGTTTCCGTCTGAGATCTTGCCGGAGTTTCTCTATTTGGGAAGCTATGATAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAATACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGACAAGACCTTACCTTTTGATGAAGCAGTTGAATTTCTAGAGCAATGTGAAAAAGACAAGGCTCGTGTTCTGGTGCATTGCATGTCAGGAAAAAACAGGTCCCCATCTATTGTTATTGCGTTCTTGATGAAATGCAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGACCATCCGTGGACTTAACTGAGCCTGTCTATCAGCAGCTGCAAGAGTATGAGCTGAAGGTTTTTGGATCAGCAGAAAACTCCCTCCCAACCATGCCAATCTTCCCTTCGGTTGGTCTGCCTTCTTTTAGCTTTGGCTTCCCAAAGACCAACGACCCGGTTTCGATAACTCCATTCAACAACCTCGGTGCGGCATCAATATTTTCCCGCCCTACTGTAGATGTACCTTCCCATGAGTTTACATTCGGTGCTGGCCAGACTCAAACCAGTTTTGCCGCAGGCCCCTTCGGCACAAATCCACAAAACTCAACCAGCAGCAACATCTAA 804 46.39 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPASSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDEAVEFLEQCEKDKARVLVHCMSGKNRSPSIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPVYQQLQEYELKVFGSAENSLPTMPIFPSVGLPSFSFGFPKTNDPVSITPFNNLGAASIFSRPTVDVPSHEFTFGAGQTQTSFAAGPFGTNPQNSTSSNI 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44165482 44169299 - Sed0025216.1 Sed04g3441 712044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3441 267 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Sed04g3441 267 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Sed04g3441 267 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Sed04g3441 267 Gene3D Protein tyrosine phosphatase superfamily 40 187 IPR029021 -
Sed04g3441 267 CDD DSP_plant_IBR5-like 47 176 - -
Sed04g3441 267 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Sed04g3441 267 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Sed04g3441 267 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 265 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(PANTHER)|GO:0033549(InterPro)|GO:0043407(InterPro)
Sed04g3441 267 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Sed04g3441 267 Pfam Dual specificity phosphatase, catalytic domain 55 177 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3441 Sed-Chr4:44165482 Sed04g3442 Sed-Chr4:44165482 5.50E-151 tandem
Sed04g3441 Sed-Chr4:44165482 Sed05g1887 Sed-Chr5:32296541 3.10E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3441 K04459 - csv:101211000 500.36