Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3453 ATGTCGGGCCAAAGCCAACGTTTGAATGTAGTTCCAACAGTTACCATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGGGGGCATGCTCTTCTCAAGAAGAAGAGTGATGCTTTGACGGTTCAGTTCCGTCAGATTCTTAAGAAGATTGTTTCAGCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTGCATTCTCTCTCACTGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTTGAGAATGTCCAAAATGCTGCTATTAAGATTCGATCTCGACAGGAGAATATTGCTGGTGTAAAACTCCCAAAATTTGAACACTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGCCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCTTCACTTCAGACATCTTTTTTGACTCTTGATGAGGCAATTAAAACCACCAACCGCAGGGTTAATGCTCTAGAGAATGTTGTGAAGCCAAGGCTAGAGAACACGATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGACAACGTGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAATGTGGCTTTACAAAAGGGCGTCTCCCTAAGTTCCGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGATGATATCATTTTTTGA 786 43.51 MSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSAFSLTEAKYVAGDNIKHIVLENVQNAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRANAKLFAEEQLAENVALQKGVSLSSAHNLLSAAAEKDDDIIF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44224056 44226042 + Sed0017703.2 Sed04g3453 712056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3453 261 FunFam V-type proton ATPase subunit D 1 198 - -
Sed04g3453 261 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 1 261 IPR002699 GO:0005774(PANTHER)|GO:0033176(PANTHER)|GO:0046961(InterPro)
Sed04g3453 261 Pfam ATP synthase subunit D 17 208 IPR002699 GO:0046961(InterPro)
Sed04g3453 261 NCBIfam V-type ATP synthase subunit D 9 211 IPR002699 GO:0046961(InterPro)
Sed04g3453 261 Coils Coil 179 199 - -
Sed04g3453 261 Gene3D - 1 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3453 Sed-Chr4:44224056 Sed05g1882 Sed-Chr5:32228530 1.20E-134 dispersed
Sed04g3452 Sed-Chr4:44224056 Sed04g3453 Sed-Chr4:44224056 9.00E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3453 K02149 - csv:101213101 480.715