Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3473 ATGTCGAATAATGACGAAGGCAAGAATGTGTACCAGCAATACAATCCATTTGTGTACAACCAGATGGATATCAACAGTTCGATCTTCCCACAACAGCCGTCGTCGGATCCTTCTTTCAGGAGCTTCACGAACTTCTTCGAGACGTCGTTGAACTACGACAGCGTGTCGAGAGCCTTCGACGTGTCGTGCTGTTCATCGGAAGTTGTTTCGGCAGCGGAGGAGATGTCGACAAAGAAGGCTTCGGGTGGAGGAAAAGGTTTGAACCAATTGCCGACGCCAAATTCTTCAGTGTCGTCTTCGTCTAATGAGGCTGCAGCGGAAGAAGACTCGGTCAAGAACATTGAGATTAAAGATGAACAAAAGTCTAAGAAACAGGCAAAGAAGGAGAAACGAGAGAGGGAGCCCCGATTTGCTTTCTTGACAAAGAGTGAGAATGATAACCTTGAAGATGGGTATAGATGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTATAGATGCACCAGTAAAAAATGCCTAGTAAAAAAACGAGTTGAACGATCGTACCAAGATCCATCTATAGTGATAACTACATATGAAGGGCAACACACCCACCATTGCCCAGCTACACTCCGAGGTCATTATGCAGGATCGATGTCGTTGTCCCCGTTTTACTCATCGACGTTGACGTCCACAACAGCAGGCTCCTCCGACCCGACCCTTCCTCAAGAACTCTTCTCGCATTTACTACCAATCACGAACTTCCAGACCCAACCGACGTCGATGTACCAAAATCTAAACCTTCAACAACACCTTCAAATGCCCGATCAATATGGTTTGATGCAAGATTTGTTCACTAAAAAATAG 867 45.44 MSNNDEGKNVYQQYNPFVYNQMDINSSIFPQQPSSDPSFRSFTNFFETSLNYDSVSRAFDVSCCSSEVVSAAEEMSTKKASGGGKGLNQLPTPNSSVSSSSNEAAAEEDSVKNIEIKDEQKSKKQAKKEKREREPRFAFLTKSENDNLEDGYRWRKYGQKAVKNSPYPRSYYRCTSKKCLVKKRVERSYQDPSIVITTYEGQHTHHCPATLRGHYAGSMSLSPFYSSTLTSTTAGSSDPTLPQELFSHLLPITNFQTQPTSMYQNLNLQQHLQMPDQYGLMQDLFTKK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44383313 44386865 + Sed0004506.1 Sed04g3473 712076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3473 288 ProSiteProfiles WRKY domain profile. 143 208 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3473 288 FunFam WRKY transcription factor 57 134 208 - -
Sed04g3473 288 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 216 IPR044810 GO:0003700(InterPro)
Sed04g3473 288 SMART WRKY_cls 148 207 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3473 288 MobiDBLite consensus disorder prediction 87 107 - -
Sed04g3473 288 SUPERFAMILY WRKY DNA-binding domain 141 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3473 288 MobiDBLite consensus disorder prediction 77 137 - -
Sed04g3473 288 Pfam WRKY DNA -binding domain 149 206 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3473 288 Gene3D WRKY domain 132 209 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3473 288 MobiDBLite consensus disorder prediction 108 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3473 Sed-Chr4:44383313 Sed14g1557 Sed-Chr14:23766438 2.40E-35 dispersed
Sed04g3473 Sed-Chr4:44383313 Sed04g3474 Sed-Chr4:44383313 5.50E-88 tandem
Sed01g0735 Sed-Chr1:5413448 Sed04g3473 Sed-Chr4:44383313 5.40E-43 wgd
Sed04g3473 Sed-Chr4:44383313 Sed05g3276 Sed-Chr5:42167882 1.90E-43 wgd
Sed04g3473 Sed-Chr4:44383313 Sed05g1863 Sed-Chr5:32047521 6.50E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38349 PF03106 WRKY 1.30E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3473 - - - 0.0