Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3475 ATGGCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTATCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCTTTTATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCTCCTGAAAACTTCTCTGTTTCTCAAATACCAAATGTCTCAAAGGATATTAAGGTGGACAGAATAGCAACTCAATCGGCTCACCACAACCATCTCGAGAGTCTTTATGTTTCCATTCATGATCAATCAAGTGACAAGAACTCGGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGATGCTGATAACATAAGCCAATGTAGCTCCAATTATCAACATGAGAAGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGCCTTCCATGTCATATGGGGGGTATGGAGGACTTGTCACTGCCTCGCCTCTTGTTGGCCTGCCCGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCACTGCTGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTACAAAGGCAGGCTTGTAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTGAGACATAAGAATCTTGTACGACTCCTGGGCTATTGCATCGAAGGAGTTCATAGGATGTTGGTTTATGAATATGTGAACAATGGAAACTTAGAACAATGGCTACATGGGGCTATGCGCCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCGAAGGTTGTCCATAGAGACATTAAATCAAGCAACATCTTAATCGATGATGAGTTTAATGCAAAGGTTTCAGATTTTGGATTGGCTAAACTCTTGGATGCAGGAGAGAGTTATATCACGACCAGAGTGATGGGGACATTTGGTTATGTGGCACCTGAGTATGCAAACACTGGCTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGCGTTCTTCTTCTTGAATCAATTACAGGAAGAGACCCCGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTGAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTTATTGACCAAAATATTGAAACTAAACCCGCTACCCGCGCATTGAAACGGGCCCTTCTGATTGCACTTAGGTGTGTTGATCCAGAGGCGGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGCTTGAAGCTGATGATTACCCATCACGTGAGGATCGGCGGAGCCAAAAGAGCAGTGCAGCAAACTCAGAGATCGAATCTGTGAGAGAGTTCTCCAGTCAAGCCGAGGTCGGAAGTAAACCAGGGGAATCACAAAGCAGACCTGCAAATGTATGA 1539 43.66 MASGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNHLESLYVSIHDQSSDKNSEKMIGHLGMSKSSDADNISQCSSNYQHEKVFSSHSGEEGSSGTVRKQPSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFTADNVLGEGGYGVVYKGRLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESYITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLESITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDQNIETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSAANSEIESVREFSSQAEVGSKPGESQSRPANV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44396275 44402562 - Sed0010732.1 Sed04g3475 712078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3475 512 PANTHER OS01G0323000 PROTEIN 6 489 IPR052232 -
Sed04g3475 512 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
Sed04g3475 512 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Sed04g3475 512 FunFam Putative receptor-like serine/threonine-protein kinase 268 478 - -
Sed04g3475 512 MobiDBLite consensus disorder prediction 481 512 - -
Sed04g3475 512 FunFam Putative receptor-like protein kinase 174 267 - -
Sed04g3475 512 Pfam Protein kinase domain 194 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3475 512 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3475 512 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Sed04g3475 512 Coils Coil 212 232 - -
Sed04g3475 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3475 512 MobiDBLite consensus disorder prediction 463 512 - -
Sed04g3475 512 SMART serkin_6 192 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3475 512 CDD STKc_IRAK 198 464 - -
Sed04g3475 512 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524(InterPro)
Sed04g3475 512 MobiDBLite consensus disorder prediction 463 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3475 Sed-Chr4:44396275 Sed04g3477 Sed-Chr4:44396275 1.20E-290 dispersed
Sed04g3475 Sed-Chr4:44396275 Sed04g3476 Sed-Chr4:44396275 1.20E-290 tandem
Sed09g0596 Sed-Chr9:6784440 Sed04g3475 Sed-Chr4:44396275 6.00E-156 transposed
Sed01g0736 Sed-Chr1:5420644 Sed04g3475 Sed-Chr4:44396275 1.50E-216 wgd
Sed04g3475 Sed-Chr4:44396275 Sed05g3277 Sed-Chr5:42172537 3.80E-209 wgd
Sed04g3475 Sed-Chr4:44396275 Sed05g1860 Sed-Chr5:32038219 3.00E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79092 PF00069 Pkinase 2.60E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3475 - - - 0.0