Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3505 ATGCACGTTTATGCATTAAATTTTGTTGGCGTACTCCCACCAGAGCTATGGACATTAACTTCTCTCACCTACCTGAAGTTGGATCAAAATGTCTTGTCAGGAACTCTGCCTGCATCTGTTGGTAATCTTACACAATTACAAACCTTGAGCCTTGGCATTAATGCATTATCAGGGAGACTACCGAAGGAACTTGGATCTCTTACTAATTTGAAACTGTTGGCATTTGGGTCCAACAATTTTTCTGGTTCCTTGCCACCAGAGCTTGGAAATCTTTCTATGTTAGAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGATATTCCTCAATCGCTTTCAAGTCTAATGAACATGCGTATAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGAAATTGGACAAGTCTCACAGCTTTGAGGTTTCAAGGAAATGCTTTCTCAGGTCCCATACCATCAACGTTTTCTAACTTGACATCTTTGACTGAGTTGAGAATTGGTGATTTAACCAATGGGAGCTCTTCTTTGGCATTCATCAGCAATATGAGATCTTTAACTCTCCTAGTGTTGAGAAATAATAATATGACAGGTTCAATTCCATCTAACATTGGAGAATTTCGAAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAACAAGTTAAATGGGATCCTACCTGCACAAAAGAGTGCATCCCTTCTAAATATAGATTTATCATATAATGATTTATCAGGGAGCTTTCCTTCTTGGGTCAACCAGCGAGACTTACAGTTAAATGTAGTTGCCAACAACTTCACGATTGATGGTTCAAGTAGCAGTGGTTTGCCATCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGCTCGTCCAGTATATTCTAATTTTGGGATCAAGTGTGGAGGTCCACAGATAACAAGTTCATCAGGGGTTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCAGCTACGTACTTTGTTACTGAGACAGAGAGGTGGGCCATTAGTAATACTGGATACTTTACTGGGTCTAACGATCCTCAGTACAGAGCCAATACATTGTCTCAATTCGCAAACTCCATGGACACAGAGCTTTTTCAGACACAGCGATTATCTGCTTCATCATTGAGATACTATGGACTGGGGCTTGAGAATGGCAACTACACTGTCAACCTTCAGTTTGCAGAAATAGCTTTCCTAGATTCAAATACATGGCAAAGCCGCGGGAGACGTGTTTTTGATATATACATACAGGGAAATCGTGTCATACAGAATTTTGATATTAGAAAGGAGGCTGGTGGGTCTTTCCTTTCTGTTAGCCGGAGCTTTACGGCTGTGGTTACAGAAAGCTTCCTGGAAATTCATCTATTTTGGGCTGGGAAAGGTACTTGCTGCATACCTACTCAGGGTACATATGGACCTTCTGTTTCAGCCATCAGTGCTACCCCAGATTTCGAACCAAGTGTCAGTAACATAGCTCCAGGAACTAAGGAGAATAATAAAACAGGCCTGATTGTAGGGCTCGTGGTTGGTTTAGGATCTGTTTTCTTTCTGATCATTGGTGCAGTTTTCATTGTTGTCCAGAGAAGAAGAAAGCGTCGTGCCTATGAAGATGAAGAGCTCCTGGGAATAGATGCTAGACCGTACACATTTAGTTTTTCTGAACTAAGGGATGCTACAAATGACTTTAATTCATCTAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTTCAAGGGAACACTAAGCGATGGAAGAACGGTTGCTGTGAAGCAACTTTCGGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAACTATATGGGTGTTGCATCGAGGCTGATAAGCGTCTCCTTGTTTATGAGTTCCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGAAAAAAAACATTTGATTATTGATTGGCCAACACGTTTCGACATATGTGTGGGTGTCGCAAGAGGTCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGAACCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTCGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGACGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGATCCAAGCTTAGAGCAAGACAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAATTGTGAATTCGAGATGGTGGACTCGGAGTTAGCATCAGAGTACAGCAAGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTATGCACCCAAACATCTCCAGGTCTTCGGCCATCGATGTCCCGCGTGGTGGCAATGCTGACAGGCGACATCGAAGTGACTGCTGTAACTTCTAAACCAGGATACCTGACAGATTGGAGATTTGATGACACTACGAGCTTTATAGACATTCCATCTACAGAAGAACCTGATACTGGCCGTTATGCATCGACCAGTTCGACTACCGTTGATGCAAATCGCTCGCCAGCAAATGCTTCTGATGCAATGCTCCGTGGGTTATTAGGGGAAGGGAGGTGA 2799 42.73 MHVYALNFVGVLPPELWTLTSLTYLKLDQNVLSGTLPASVGNLTQLQTLSLGINALSGRLPKELGSLTNLKLLAFGSNNFSGSLPPELGNLSMLEELYIDSSGVSGDIPQSLSSLMNMRIVWASDNEFTGRIPDFIGNWTSLTALRFQGNAFSGPIPSTFSNLTSLTELRIGDLTNGSSSLAFISNMRSLTLLVLRNNNMTGSIPSNIGEFRRLTQLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLNGILPAQKSASLLNIDLSYNDLSGSFPSWVNQRDLQLNVVANNFTIDGSSSSGLPSGLNCLQRNFPCNRARPVYSNFGIKCGGPQITSSSGVLFERENETLGPATYFVTETERWAISNTGYFTGSNDPQYRANTLSQFANSMDTELFQTQRLSASSLRYYGLGLENGNYTVNLQFAEIAFLDSNTWQSRGRRVFDIYIQGNRVIQNFDIRKEAGGSFLSVSRSFTAVVTESFLEIHLFWAGKGTCCIPTQGTYGPSVSAISATPDFEPSVSNIAPGTKENNKTGLIVGLVVGLGSVFFLIIGAVFIVVQRRRKRRAYEDEELLGIDARPYTFSFSELRDATNDFNSSNKLGEGGFGPVFKGTLSDGRTVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKKHLIIDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGDLNPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKIYLLEWAWYLHENNCEFEMVDSELASEYSKEEVKRVIGVALLCTQTSPGLRPSMSRVVAMLTGDIEVTAVTSKPGYLTDWRFDDTTSFIDIPSTEEPDTGRYASTSSTTVDANRSPANASDAMLRGLLGEGR 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44518142 44528406 - Sed0005509.1 Sed04g3505 712108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3505 932 Pfam Protein tyrosine and serine/threonine kinase 595 860 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3505 932 FunFam Putative LRR receptor-like serine/threonine-protein kinase 177 300 - -
Sed04g3505 932 FunFam Leucine-rich repeat receptor-like protein kinase 561 667 - -
Sed04g3505 932 MobiDBLite consensus disorder prediction 893 932 - -
Sed04g3505 932 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 84 - -
Sed04g3505 932 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 887 IPR051824 GO:0005886(PANTHER)
Sed04g3505 932 CDD STKc_IRAK 598 863 - -
Sed04g3505 932 FunFam Putative LRR receptor-like serine/threonine-protein kinase 668 873 - -
Sed04g3505 932 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 85 176 - -
Sed04g3505 932 FunFam Leucine-rich repeat receptor-like protein kinase 322 512 - -
Sed04g3505 932 Pfam Malectin domain 325 508 IPR021720 -
Sed04g3505 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3505 932 Gene3D Ribonuclease Inhibitor 176 300 IPR032675 -
Sed04g3505 932 Gene3D Ribonuclease Inhibitor 2 175 IPR032675 -
Sed04g3505 932 Gene3D Transferase(Phosphotransferase) domain 1 668 872 - -
Sed04g3505 932 SMART serkin_6 592 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3505 932 CDD TM_EGFR-like 528 563 - -
Sed04g3505 932 SUPERFAMILY L domain-like 8 295 - -
Sed04g3505 932 ProSiteProfiles Protein kinase domain profile. 592 867 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3505 932 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Sed04g3505 932 Pfam Leucine Rich Repeat 69 91 IPR001611 GO:0005515(InterPro)
Sed04g3505 932 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515(InterPro)
Sed04g3505 932 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515(InterPro)
Sed04g3505 932 Gene3D Phosphorylase Kinase; domain 1 553 667 - -
Sed04g3505 932 Gene3D - 324 512 - -
Sed04g3505 932 SUPERFAMILY Protein kinase-like (PK-like) 576 895 IPR011009 -
Sed04g3505 932 MobiDBLite consensus disorder prediction 893 916 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3505 Sed-Chr4:44518142 Sed05g1848 Sed-Chr5:31925759 4.10E-07 dispersed
Sed08g0439 Sed-Chr8:2708061 Sed04g3505 Sed-Chr4:44518142 1.60E-86 dispersed
Sed04g3505 Sed-Chr4:44518142 Sed05g1847 Sed-Chr5:31925212 4.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79095 PF07714 PK_Tyr_Ser-Thr 4.30E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3505 - - - 0.0