Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3509 ATGGAGATAGTTGATGCAAATTCCTTCACCGAGGAAGAAAAGCTGGAAGAATCAATTGGAGGAGTTCAAAGAATTGGAGTGTTCGCAGAGCTGAAACATTACTGTTTAGAGCTGTTACAGCTTCTCCAAACGCCCAAAAAGCATTCCTCTTCAGTTCATTCCTTGCTCGAGCTGCTTCGCAAAACTTCATCAACTTCTCTGCAACCTTGCTCTGATTTTGTGCTGTTTCCGCTGCTGCTGCTATTCGATGCAGCTGTTGTGGATAGATCTCAGCAGAAGGTTGATTCCAAAGAAAACATTATGGCGTCTGTCGGGCATGATCTGCCTCATAAGTTGAGTGATAGTGTGGCAGAAGGTGTGCTTCAGTGCCTTGAAGAACTGCTGAAGAAGTGTCATTTAGGATCCGTGGAACAGATGATTGTAGTGCTGAAAAAGTTAACATGTGGAGCTTTGTTATCTCCCTTTGAGGCATCAGAAGAGTTTCGTGAAGGAGTAATCAAGTGTTTTAAGGCAATTTTTATGAATTTAGGTCCCTGCTCAGATGGTGCATGCTCATGTAAACATATATCTGGTTCTCCAGCACTTTCAGAAAACAAAGAATTTCAAGGTCATCTTGATGTGCTTTCCGAAGAGTCAATGCCAAATGAATGCTTGCTTGAATTTCTTCGGAGTGAAACTGCTTCAGCTGCTCTTGGACACTGGCTGTCACTTCTTCTCAAAGCTGCAGATATTGAGGCTGCACGAGGACATCATGGAAGTTCTAAGATTCGTATTGAAGCCTTTATGACCCTTCGCATACTTGTTGCAAAGGTTGGAACAGCTGATTCATTGGCCTTTTTCTTGCCTGGTGTTGTCAGCCAATTTTCTAAAGTTCTGCGGGCTTCTAAAACATCATTAAGTGGGGCTGCGGGAAATTCAGAAGCCACAAACCAAGCAATTAGAGGCTTGGCTGAATATCTTATGATAGTCCTTGAGGATGATGCTAATAAATCTAGTCTTGATGTGCTTATGGATTTTCAATCTGAAATTATGTTAAAGGGTAAAAAGGCACAATATATTCTAGAGGAACTTCGTCAATTGCCAGATAAAGTCCAAGGTGGTAGTATGAAGGTAGAAGAATCTTCATCTGCCAAGGTGGTGAATAAAACTACTTATAAATCTAGTTCTAAGGAGAAGATAAGTGCTGACTATCTTAAGGGGAACAAGTCTTTTCACGTGGATCGTACAAAAGAATGGCTTGCAGAAACTTCAACACATGTGGATAAACTATTAAGCGGAACTTTTCCATATATTTGTGTCCATCTTTTAAAAAAGGTTAGACTGAGCATCCTGGCTGCCGTAAAAGGACTTATATCAAGGTGCAGTTATACGCTAAAGGAGAGTAGATTGATGCTTTTGGAGTGCTTGTGTGCTTTGGCTATTGATGACTCTGATGATGTTTCATTCACTGCACAAGAGTTCCTTGAGTATTTATTCAGGATAACCCAGAACCATCAATTGCAGCATGATATTGGCAAAATTTTTGTGAGGCTGGTTGAAAAGCTTCCGAATGTGGTTCTTGGAAGTGACGAGAAGTTTGCTCTTTCACATGCTCGACAGTTACTTGTAGTGGCATACTATTCTGGTCCTCAACTCATTATAGATCATCTTATCCACTCTCCAGTAACAGCCATTCACTTTCTAGATGTATTTGCTGTTTGTCTAAGTCAGAATTCAGTTTATGCCAGTTCTCTTGGAAAATTTCTTTCAGCCAGACCATCTTCTGTAGGATATCTGCACTCTCTTACTGAACTAAAAGTTGGAACTAGTTTCATCAGTGATTGCCTTTCCATCTCGAATACTGCCTCACCTGCAGCTCGAGAGCTCTCAATAGTTCAGGAGAAAGCTATACAGCCAAATGGTCACGTGCTTCCTCGCATGCCCCCATGGTTTCATGGGGTTGGCAGTCAGAAACTGTATGAAGCTCTTGGAGGAGTTCTCCGACTTGTTGGTTTGTCTCTGGTGTCAGATAGAAAAAGTGAAGGCAGCTTGTCGGTTACCATTGATATCTCACTGGGAAACTTGCAAAAATTGGTTTCTGACATTCGAAAGAAGGAATACAGTGAAGAAAGCTGGGACAATTGGTATAGGAGGACTGGTTCAGGACTATTAGTGCGCCAGGCAAGCACTGCTGTGTGTATTTTGAATGAGATGATATTTGGTGTTTCAGAATATTCAGTAGACTACTTCTCAAGTACATTTCAGAGAGCAAGAATGCATAGGAAGATTACCAATGACTATGAATGTTCCACAACTAATCAATCTAGTTGGAAGATTTCCCACGAAAAAGTTAGAGCTCAATTTATTGATTGTATTGGTAGAATCTTGCATGAGTACCTATCTCCTGAGATATGGGACCTACCAATACAACATGAATCTTCCTTGGTGCATCCTGTTGGTGAAGACATTAGTTTACACCTCTTCAGGGACACTGCTATGCTGCATCAGGAAAGATCATTCTTTATACCCTATGTTATAATTGAAGGAATAGGCATTTTTAGTATGTGCCTTGGAAAAGATTTTTCTTCTTGTGGATTTCTTCATTCATCTCTTTATTTGTTGCTTGAGAATCTTATTTCCTCAAATGTGGAAGTTAAAAGCACCACTGATGCTGTCTTACATGTCCTTTCTTCTACTTCTGGCTACCCAACAGTTCAAGACTTGGTTTTGGAAAATGCAGATTATGTGATTGATTCTATATGTCGGCAGTTACGTCATTTGGATCTGCACCCTCACGTGCCGAATGTTCTTGCTGCCATCCTTTCCTATATCGGAATAGCGCATGAGATTTTGCCTCTGTTGGAGGAACCTATGCATTCTGTATCGCTGGAACTTGAGATTCTTGGAAGACACCAGCACCCCAATCTAACTGGTCCTTTCTTAAAGGCAGTTGCAGAGATTGCCAGAGTATCAAAGTATGAATCTAATACCCTGCCAAATAAAGCCGCATCATATCACGAACATGTTAAGTCTATAATCTCTAAGGAGGAATCTGAGTCTGGAGGAGTGTCTAGATCGTGTCTGGATGATGACACGAAAATATCTTCCATGGAATCAGAGTGGGAAAATATTTTGTTCAAGTTCAACGATTCCAGAAGATATAGGCGAACAGTCGGATCCATTGCTGGTTCATGCATCGTGACTGCTATACCTCTTTTAGCTTCACAGAATCAAGCATTGTGCTTGGTGGCTTTAGATATTGTTGAGTATGGCGTTGTGGCATTGGCAAAAGTGGAGGAAGCCTACAAGCATGAGAAAGATACCAAGGAAGAAATTGAGGAAACGTTGCGGTCGCATTCCTTTTATCGACTTCTGGACACTTTGGATGTTTCTGAAGAGGGGTCTGATGAAAATAGGTTGCTTCCAGCAATGAATAAAATATGGCCCTTTCTGGTTGCTTGCATTCAGAACAAAAATCAAGTGGCTGCCCGAAAATGCTTAAATGTGATAAGCAGTTCAGTACAAATCTGTGGAGGAGATTTCTTCACGCGCCGTTTCCATACCGACGGGTCTCATTTTTGGAAGCTCCTAACGACATCCCCATTCATTAGGAAACCAAACTTGAGAGAAGAGAAGCCAGTGTTACAACTTCCTTACCGAAACACATCGAAATCATCAGAGGACACGGTTGCTGAAGTTTCCAGTTTGAAAGTTCAAGTTGCAGTGCTGAATATGATTGCCGATCTATCTAAAAACAAAAGAAGTGCATCGGCATTGGAAGTAGTTCTCAAGAAGATCAGTGGCCTAGTAGCTGGTGTAGCCTTTAGTGGAGTTATGGGGCTTAGGGAAGCATCTTTGAAAGCGCTCGAAGGACTTGCATCTATCGATCCCGATCTCATTTGGCTTCTCGTCGCCGATGTTTACTACTCCATGAAGAAAGACATGCCGTCACCACCAACACCAGATTTTCCCGAGGTATCTCGACTTCTACCTTCACCTTTATCTTCAAAAGGATATCTTTATGTACTTTATGGGGGTAAAAGTTATGGTTTTGACATTGAAGTTTCGTCTGTGGAGTTTGTATTTAAGAAATTGCAATCCAATATTTTTATTTGTTAA 4098 41.24 MEIVDANSFTEEEKLEESIGGVQRIGVFAELKHYCLELLQLLQTPKKHSSSVHSLLELLRKTSSTSLQPCSDFVLFPLLLLFDAAVVDRSQQKVDSKENIMASVGHDLPHKLSDSVAEGVLQCLEELLKKCHLGSVEQMIVVLKKLTCGALLSPFEASEEFREGVIKCFKAIFMNLGPCSDGACSCKHISGSPALSENKEFQGHLDVLSEESMPNECLLEFLRSETASAALGHWLSLLLKAADIEAARGHHGSSKIRIEAFMTLRILVAKVGTADSLAFFLPGVVSQFSKVLRASKTSLSGAAGNSEATNQAIRGLAEYLMIVLEDDANKSSLDVLMDFQSEIMLKGKKAQYILEELRQLPDKVQGGSMKVEESSSAKVVNKTTYKSSSKEKISADYLKGNKSFHVDRTKEWLAETSTHVDKLLSGTFPYICVHLLKKVRLSILAAVKGLISRCSYTLKESRLMLLECLCALAIDDSDDVSFTAQEFLEYLFRITQNHQLQHDIGKIFVRLVEKLPNVVLGSDEKFALSHARQLLVVAYYSGPQLIIDHLIHSPVTAIHFLDVFAVCLSQNSVYASSLGKFLSARPSSVGYLHSLTELKVGTSFISDCLSISNTASPAARELSIVQEKAIQPNGHVLPRMPPWFHGVGSQKLYEALGGVLRLVGLSLVSDRKSEGSLSVTIDISLGNLQKLVSDIRKKEYSEESWDNWYRRTGSGLLVRQASTAVCILNEMIFGVSEYSVDYFSSTFQRARMHRKITNDYECSTTNQSSWKISHEKVRAQFIDCIGRILHEYLSPEIWDLPIQHESSLVHPVGEDISLHLFRDTAMLHQERSFFIPYVIIEGIGIFSMCLGKDFSSCGFLHSSLYLLLENLISSNVEVKSTTDAVLHVLSSTSGYPTVQDLVLENADYVIDSICRQLRHLDLHPHVPNVLAAILSYIGIAHEILPLLEEPMHSVSLELEILGRHQHPNLTGPFLKAVAEIARVSKYESNTLPNKAASYHEHVKSIISKEESESGGVSRSCLDDDTKISSMESEWENILFKFNDSRRYRRTVGSIAGSCIVTAIPLLASQNQALCLVALDIVEYGVVALAKVEEAYKHEKDTKEEIEETLRSHSFYRLLDTLDVSEEGSDENRLLPAMNKIWPFLVACIQNKNQVAARKCLNVISSSVQICGGDFFTRRFHTDGSHFWKLLTTSPFIRKPNLREEKPVLQLPYRNTSKSSEDTVAEVSSLKVQVAVLNMIADLSKNKRSASALEVVLKKISGLVAGVAFSGVMGLREASLKALEGLASIDPDLIWLLVADVYYSMKKDMPSPPTPDFPEVSRLLPSPLSSKGYLYVLYGGKSYGFDIEVSSVEFVFKKLQSNIFIC 1365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44573044 44584470 + Sed0006880.1 Sed04g3509 712112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3509 1365 SUPERFAMILY ARM repeat 253 1294 IPR016024 -
Sed04g3509 1365 Coils Coil 1088 1108 - -
Sed04g3509 1365 Pfam TELO2-interacting protein 1 864 954 IPR049362 -
Sed04g3509 1365 PANTHER TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER 26 1356 IPR052587 GO:0005737(PANTHER)|GO:0006338(PANTHER)|GO:0070209(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3509 K20403 - - csv:101212708 2212.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1116 . Blo13g00596 . . . . Bma08g00817 . . . . . . . Sed04g3509 . . Bhi05g02009 Tan02g0053 Cmetu01g1368 Lac12g0050 Hepe02g0022 . . . . . . . . . . . . . . Csa07g01198 . . . . . . . . . . . . . . . . . Cpe15g00896 . . . . . . . . . . . . . . . . . Chy01g00865 Cme01g01518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007447 2 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35