Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3516 ATGGCAACCAAAAGGAGCGTCGGTACCTTGAAGGAGGCTGATTTGAAGGGGAAGAGGGTTTTTGTAAGGGTCGATCTCAACGTTCCGTTGGATGATAGCTTCAAGATCACCGATGATACCAGAATCCGTGCCGCTGTTCCCACCATTCAGTATTTGCTCGGCCATGGCGCTAGGGTTATCCTCTCCAGCCATTTGGGACGTCCAAAGGGTGTAACACCAAAATACAGTTTGAAACCTCTTGTTCCACGTCTTTCTGAGCTTCTTGGACTTCAGGTGGTTATGGCCGATGATTGTATTGGCGCAGAAGTTGAGAAGTTGGTTGCTGAATTGCCTGAGGGAGGTGTATTGCTGCTAGAAAACGTGAGGTTTTACAAAGAGGAAGAGAAGAATGACCCTGAGTTTGCCAAGAAGTTGGCTTCCCTGGCGGATCTCTACGTTAATGATGCCTTTGGAACTGCTCACAGGGCTCATGCTTCCACCGAGGGCGTGGCTAAGTTCTTGAAACCTTCTGTGGCTGGTTTCCTTATGCAGAAGGAACTTGACTACCTGGTTGGAGCTGTGTCTAATCCCAAGAGACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCATCAAAGATTGGAGTGATTGAATCCTTGTTGGAGAAGGTTAACCTTCTTTTCCTCGGCGGAGGAATGATCTTTACCTTCTACAAGGCACAAGGTTATGCAGTGGGTTCATCCCTTGTTGAAGACGACAAGCTTGACCTTGCTACCTCGCTCATTGAGAAGGCCAAAGCTAAAGGAGTTTCTCTTTTGCTTCCAACTGATGTAGTGATAGCCGATAAATTTGCTGCTGATGCTAACAGCAAGACTGTGGCAGCATCAGATATTCCAGATGGCTGGATGGGGTTGGATATTGGGCCCGATTCTATTAAGAGTTTCAGTGAAGCTTTGGATTCCACCCAAACCGTTATTTGGAATGGACCTATGGGAGTGTTTGAGTTTGACAAGTTTGCGACTGGAACCGAGGCAATTGCTAGGAAATTGGCAGAGCTGAGTGGCAAGGGAGTGACTACCATAATTGGAGGAGGAGACTCTGTTGCAGCTGTTGAAAAGGTTGGGCTTGCGGATAAGATGAGCCACATCTCCACCGGTGGTGGCGCAAGCTTAGAGCTTCTTGAAGGAAAACCGCTTCCTGGCGTTCTTGCCCTCGACGACGCTTGA 1206 48.18 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDSFKITDDTRIRAAVPTIQYLLGHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGLQVVMADDCIGAEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNLLFLGGGMIFTFYKAQGYAVGSSLVEDDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAADANSKTVAASDIPDGWMGLDIGPDSIKSFSEALDSTQTVIWNGPMGVFEFDKFATGTEAIARKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44635018 44638224 + Sed0000654.1 Sed04g3516 712119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3516 401 PIRSF Pgk 2 401 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 FunFam Phosphoglycerate kinase 11 184 - -
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 CDD Phosphoglycerate_kinase 10 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 PANTHER PHOSPHOGLYCERATE KINASE 3 401 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Sed04g3516 401 FunFam Phosphoglycerate kinase 189 376 - -
Sed04g3516 401 Gene3D - 187 400 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 Gene3D - 8 184 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 Pfam Phosphoglycerate kinase 10 390 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Sed04g3516 401 SUPERFAMILY Phosphoglycerate kinase 8 400 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0764 Sed-Chr1:5709336 Sed04g3516 Sed-Chr4:44635018 2.30E-192 wgd
Sed04g3516 Sed-Chr4:44635018 Sed05g3307 Sed-Chr5:42436797 8.80E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3516 K00927 - csv:101215513 737.643