Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3520 ATGGGGATTAAAGTTTCAAAGCCGAGTCAGGGGAGAACGGAACCCCTTAGCCTCCAACACCACCTGATCAATTATCTATCAAAAAACCTTTTTATCCGTAACTTGGTATCCAAGAAAAGGAGGCGCATGCTTGTTGCCGGCTATGATCTCGACATGTCATACATCACAGACCATGTACTGGCAATGTCATTCCCTGCCGAACGTATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACGTTTTCATGGGCGTGTGGAGGCATTCCCTTTCGATGATAATCATGTTCCACCTCTAGAGATGATCAGAATTTTCTGCGAAAATGTCTCTTCATGGCTATCGTCCCACCCCAAGAATATTGCGGTTGTACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATCTGCCTATATGGTTTACTGTGGCATGCCAGCGGAGGATGCACTTCACCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGAAGATATGTGGACTACTGGGCAAAGTGCCTTTCCTTTCCCAAGGGAGTTCATAATGTACCTCCTGAGGTGACGTTGCCCAATCCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTACGACACTGTTAATACTGAATCAATTTACTTTGTGGTCTCAGAATTGCAGGAGGGTCCTTCTCAGCTATACCGCCCATCGATAGAACTTACCAGGAATCGTTGCAGACAATTTAAGAAAGGTCATGAGAGAAGTAACAGTCCTTGTTACTTTATATCTTTTGTTGATGGCGAAAATGAAGAGGACGAGCCAGAACTTGAACCCCACCTTGTAGTTCAAATGGATACCGAGTGTACAGCACTGTACCACAAAACCTGTCTTGACTACAATTTTGAGCAGCCTCTACCACTAACTGGAGATGTACGCATCATATTCTACGCAAAGATGTTCGGAGGGCGTCTCTTCTATGCTTGCTTTAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAAGATTTGGACAAAGTTGGGAACAGGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAATTGGTATTCGGCCCTGCGAATGCGAAACATTCATTTTTGACTTTATCGGATGAGGAAAATCCTAGTGATGATATGTCCTAA 1248 44.15 MGIKVSKPSQGRTEPLSLQHHLINYLSKNLFIRNLVSKKRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSRFHGRVEAFPFDDNHVPPLEMIRIFCENVSSWLSSHPKNIAVVHCMAGKGRTGLMVSAYMVYCGMPAEDALHLYAQRRTTNNEGVSIPSQRRYVDYWAKCLSFPKGVHNVPPEVTLPNPCRRELQRIRLYDTVNTESIYFVVSELQEGPSQLYRPSIELTRNRCRQFKKGHERSNSPCYFISFVDGENEEDEPELEPHLVVQMDTECTALYHKTCLDYNFEQPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGNRGRSICGPSFCLELVFGPANAKHSFLTLSDEENPSDDMS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44650878 44656523 - Sed0001933.1 Sed04g3520 712123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3520 415 SMART PTEN_C2_2 223 394 IPR014020 -
Sed04g3520 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Sed04g3520 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 205 IPR029021 -
Sed04g3520 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Sed04g3520 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Sed04g3520 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Sed04g3520 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
Sed04g3520 415 Pfam Swiss Army Knife protein, DSP-PTPase phosphatase domain 113 177 - -
Sed04g3520 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311(InterPro)
Sed04g3520 415 Pfam C2 domain of PTEN tumour-suppressor protein 315 393 IPR014020 -
Sed04g3520 415 Gene3D - 283 397 - -
Sed04g3520 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Sed04g3520 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
Sed04g3520 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 31 396 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3520 K01110 - - csv:101212127 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3520 Sed-Chr4:44650878 Sed05g2596 Sed-Chr5:37669456 4.70E-40 dispersed
Sed04g3520 Sed-Chr4:44650878 Sed05g2595 Sed-Chr5:37669456 4.70E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed10g0663 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g0664 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g1999 . 20 610 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.2e-180 630.9
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.1e-180 628.6
Sed05g2595 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2596 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2597 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2598 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G50110 52.6 7.0e-160 562.0
Sed14g0873 . 33 417 Protein tyrosine phosphatase (PTP) family AT3G50110 70.0 5.0e-158 555.8
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G50110 61.5 3.0e-155 546.6
Sed04g3520 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 4.4e-155 545.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1172.5
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT3G10550 66.7 0.0e+00 1142.9
Sed01g2863 . 3 764 Protein tyrosine phosphatase (PTP) family AT3G10550 70.0 2.6e-311 1065.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 65.6 0.0e+00 1110.1
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT5G04540 63.5 6.8e-314 1073.5
Sed01g2863 . 4 764 Protein tyrosine phosphatase (PTP) family AT5G04540 66.7 2.0e-295 1012.7
Sed12g2294 . 1 1135 Protein tyrosine phosphatase (PTP) family AT5G58160 52.9 0.0e+00 1083.9
Sed05g1740 . 1 1349 Protein tyrosine phosphatase (PTP) family AT5G58160 51.0 1.0e-303 1040.8
Sed05g1741 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.5 3.9e-279 959.1
Sed10g1774 . 75 390 Protein tyrosine phosphatase (PTP) family AT1G71860 66.6 7.6e-121 431.4
Sed12g2546 . 27 937 Protein tyrosine phosphatase (PTP) family AT5G23720 60.5 8.3e-287 984.2
Sed04g1865 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 7.8e-42 167.9
Sed04g1863 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 7.8e-42 167.9
Sed04g3441 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 7.7e-72 267.7
Sed04g3442 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 7.7e-72 267.7
Sed05g1887 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 2.5e-70 262.7
Sed06g2006 . 103 384 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 2.0e-114 409.8
Sed07g2221 . 94 378 Protein tyrosine phosphatase (PTP) family AT3G52180 69.5 1.7e-113 406.8
Sed07g2222 . 94 378 Protein tyrosine phosphatase (PTP) family AT3G52180 69.5 1.7e-113 406.8
Sed04g0349 . 5 284 Protein tyrosine phosphatase (PTP) family AT3G10940 65.7 1.2e-106 384.0
Sed06g0547 . 146 594 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.4e-199 692.6
Sed06g0548 . 2 450 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.4e-199 692.6
Sed01g0708 . 8 208 Protein tyrosine phosphatase (PTP) family AT2G32960 58.6 5.3e-74 275.4
Sed05g1892 . 38 234 Protein tyrosine phosphatase (PTP) family AT2G32960 65.8 7.7e-73 271.6
Sed04g3433 . 6 238 Protein tyrosine phosphatase (PTP) family AT2G32960 56.8 1.0e-72 271.2
Sed05g3223 . 10 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.3e-72 270.8
Sed05g1893 . 38 204 Protein tyrosine phosphatase (PTP) family AT2G32960 64.9 5.5e-71 265.4
Sed04g1684 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.1 4.8e-99 359.0
Sed03g1757 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.2 2.7e-78 290.0
Sed03g1757 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 4.4e-46 182.2
Sed01g0708 . 18 208 Protein tyrosine phosphatase (PTP) family AT4G03960 70.2 1.5e-76 283.5
Sed05g3223 . 25 212 Protein tyrosine phosphatase (PTP) family AT4G03960 71.3 1.7e-75 280.0
Sed05g1893 . 34 204 Protein tyrosine phosphatase (PTP) family AT4G03960 75.4 1.8e-74 276.6
Sed05g1892 . 34 234 Protein tyrosine phosphatase (PTP) family AT4G03960 64.2 1.0e-69 260.8
Sed04g3433 . 39 238 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 5.2e-69 258.5
Sed08g1212 . 5 171 Protein tyrosine phosphatase (PTP) family AT4G03960 59.9 8.6e-56 214.5
Sed06g0972 . 14 183 Protein tyrosine phosphatase (PTP) family AT4G03960 56.1 2.3e-53 206.5
Sed08g1212 . 1 200 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-77 285.4
Sed06g0972 . 3 196 Protein tyrosine phosphatase (PTP) family AT3G02800 65.6 1.2e-73 273.9
Sed01g0708 . 34 202 Protein tyrosine phosphatase (PTP) family AT3G02800 58.6 4.7e-57 218.8
Sed05g3223 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 60.5 5.1e-56 215.3
Sed05g1893 . 40 193 Protein tyrosine phosphatase (PTP) family AT3G02800 63.0 8.8e-56 214.5
Sed05g1892 . 40 223 Protein tyrosine phosphatase (PTP) family AT3G02800 52.7 5.0e-51 198.7
Sed04g3433 . 44 227 Protein tyrosine phosphatase (PTP) family AT3G02800 51.1 1.6e-49 193.7
Sed07g2453 . 1 189 Protein tyrosine phosphatase (PTP) family AT3G55270 65.3 1.5e-63 242.3
Sed04g2798 . 20 188 Protein tyrosine phosphatase (PTP) family AT3G55270 67.1 4.5e-60 230.7
Sed04g2799 . 20 188 Protein tyrosine phosphatase (PTP) family AT3G55270 67.1 4.5e-60 230.7
Sed04g3520 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 4.4e-155 545.4
Sed05g2595 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2596 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2597 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed05g2598 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.3 4.6e-217 751.9
Sed10g1999 . 8 610 Protein tyrosine phosphatase (PTP) family AT3G19420 63.5 7.8e-217 751.1
Sed10g0663 . 31 605 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 3.9e-200 695.7
Sed10g0664 . 31 605 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 3.9e-200 695.7
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G19420 59.5 4.8e-190 662.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G19420 53.6 1.9e-170 597.0
Sed14g0873 . 33 419 Protein tyrosine phosphatase (PTP) family AT3G19420 70.9 8.2e-166 581.6
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G19420 64.1 3.1e-165 579.7
Sed10g0663 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g0664 . 33 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 5.5e-189 658.7
Sed10g1999 . 20 610 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.2e-180 630.9
Sed14g0871 . 33 595 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.1e-180 628.6
Sed05g2595 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2596 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2597 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed05g2598 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 56.5 1.8e-176 617.1
Sed14g0872 . 33 631 Protein tyrosine phosphatase (PTP) family AT3G50110 52.6 7.0e-160 562.0
Sed14g0873 . 33 417 Protein tyrosine phosphatase (PTP) family AT3G50110 70.0 5.0e-158 555.8
Sed10g0665 . 1 460 Protein tyrosine phosphatase (PTP) family AT3G50110 61.5 3.0e-155 546.6
Sed12g2294 . 1 1135 Protein tyrosine phosphatase (PTP) family AT5G58160 52.9 0.0e+00 1083.9
Sed05g1740 . 1 1349 Protein tyrosine phosphatase (PTP) family AT5G58160 51.0 1.0e-303 1040.8
Sed05g1741 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.5 3.9e-279 959.1
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1172.5
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT3G10550 66.7 0.0e+00 1142.9
Sed01g2863 . 3 764 Protein tyrosine phosphatase (PTP) family AT3G10550 70.0 2.6e-311 1065.4
Sed01g2862 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 65.6 0.0e+00 1110.1
Sed03g0609 . 1 868 Protein tyrosine phosphatase (PTP) family AT5G04540 63.5 6.8e-314 1073.5
Sed01g2863 . 4 764 Protein tyrosine phosphatase (PTP) family AT5G04540 66.7 2.0e-295 1012.7
Sed05g1208 . 64 244 Protein tyrosine phosphatase (PTP) family AT3G44620 63.9 9.9e-68 254.6
Sed05g1209 . 64 172 Protein tyrosine phosphatase (PTP) family AT3G44620 73.6 8.7e-40 161.8
Sed04g0821 . 24 319 Protein tyrosine phosphatase (PTP) family AT2G35320 62.5 3.6e-109 392.5
Sed04g0822 . 24 319 Protein tyrosine phosphatase (PTP) family AT2G35320 62.5 3.6e-109 392.5
Sed14g0659 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 4.3e-285 978.0
Sed14g0660 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 4.3e-285 978.0
Sed14g0659 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.9e-256 882.9
Sed14g0660 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.9e-256 882.9
Sed14g0659 . 78 674 Protein tyrosine phosphatase (PTP) family AT5G28210 57.2 2.3e-187 653.3
Sed14g0660 . 78 674 Protein tyrosine phosphatase (PTP) family AT5G28210 57.2 2.3e-187 653.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38