Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3520 ATGGGGATTAAAGTTTCAAAGCCGAGTCAGGGGAGAACGGAACCCCTTAGCCTCCAACACCACCTGATCAATTATCTATCAAAAAACCTTTTTATCCGTAACTTGGTATCCAAGAAAAGGAGGCGCATGCTTGTTGCCGGCTATGATCTCGACATGTCATACATCACAGACCATGTACTGGCAATGTCATTCCCTGCCGAACGTATGCGTGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACGTTTTCATGGGCGTGTGGAGGCATTCCCTTTCGATGATAATCATGTTCCACCTCTAGAGATGATCAGAATTTTCTGCGAAAATGTCTCTTCATGGCTATCGTCCCACCCCAAGAATATTGCGGTTGTACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATCTGCCTATATGGTTTACTGTGGCATGCCAGCGGAGGATGCACTTCACCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGAAGATATGTGGACTACTGGGCAAAGTGCCTTTCCTTTCCCAAGGGAGTTCATAATGTACCTCCTGAGGTGACGTTGCCCAATCCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTACGACACTGTTAATACTGAATCAATTTACTTTGTGGTCTCAGAATTGCAGGAGGGTCCTTCTCAGCTATACCGCCCATCGATAGAACTTACCAGGAATCGTTGCAGACAATTTAAGAAAGGTCATGAGAGAAGTAACAGTCCTTGTTACTTTATATCTTTTGTTGATGGCGAAAATGAAGAGGACGAGCCAGAACTTGAACCCCACCTTGTAGTTCAAATGGATACCGAGTGTACAGCACTGTACCACAAAACCTGTCTTGACTACAATTTTGAGCAGCCTCTACCACTAACTGGAGATGTACGCATCATATTCTACGCAAAGATGTTCGGAGGGCGTCTCTTCTATGCTTGCTTTAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAAGATTTGGACAAAGTTGGGAACAGGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAATTGGTATTCGGCCCTGCGAATGCGAAACATTCATTTTTGACTTTATCGGATGAGGAAAATCCTAGTGATGATATGTCCTAA 1248 44.15 MGIKVSKPSQGRTEPLSLQHHLINYLSKNLFIRNLVSKKRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSRFHGRVEAFPFDDNHVPPLEMIRIFCENVSSWLSSHPKNIAVVHCMAGKGRTGLMVSAYMVYCGMPAEDALHLYAQRRTTNNEGVSIPSQRRYVDYWAKCLSFPKGVHNVPPEVTLPNPCRRELQRIRLYDTVNTESIYFVVSELQEGPSQLYRPSIELTRNRCRQFKKGHERSNSPCYFISFVDGENEEDEPELEPHLVVQMDTECTALYHKTCLDYNFEQPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGNRGRSICGPSFCLELVFGPANAKHSFLTLSDEENPSDDMS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44650878 44656523 - Sed0001933.1 Sed04g3520 712123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3520 415 SMART PTEN_C2_2 223 394 IPR014020 -
Sed04g3520 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Sed04g3520 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 205 IPR029021 -
Sed04g3520 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Sed04g3520 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Sed04g3520 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Sed04g3520 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
Sed04g3520 415 Pfam Swiss Army Knife protein, DSP-PTPase phosphatase domain 113 177 - -
Sed04g3520 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311(InterPro)
Sed04g3520 415 Pfam C2 domain of PTEN tumour-suppressor protein 315 393 IPR014020 -
Sed04g3520 415 Gene3D - 283 397 - -
Sed04g3520 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Sed04g3520 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
Sed04g3520 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 31 396 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3520 Sed-Chr4:44650878 Sed05g2596 Sed-Chr5:37669456 4.70E-40 dispersed
Sed04g3520 Sed-Chr4:44650878 Sed05g2595 Sed-Chr5:37669456 4.70E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3520 K01110 - csv:101212127 729.554