Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3522 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAAGTCGAAGACATCATCCTTCGCAAAGTTTTCCTCATTTCTCTGACCGATTCTCCCATTTCCGATTCTCGAATCGTCTATCTCGAGCAAACCGCAGCCGAGCTCATGAGCGAGAGCAAGGAATTGAGGATTTCACGAGATGTAATCGAGCGCATCATCATCGATCGTCTATCCGGCGATTTCCCCTCCGCCGAACCCGCTTTTCAGTACCTGACCGGCTGCTATTCCCGCGCTCAGGACGAAAGTAAGAAAATTGCTTCCATGAAGGATAAGAATCTGCGCTCCGAGATTGAATTGTCGCTCAAGCAAGCCAAAAAGCTCACGGTTTCGTATTGCAGGATCCATTTGGGGAACCCTGAATTGTTTTCGGGTGGGGATTTGATTGATACCCAGTCCACCACTTCGCCTTTGCTTCCTTTGATTTTTGCTGAAGTGGGTTCCTCCATTGATGGATTTGGGGCTAGTACCAGTGGAGCCTCTCACTGCCCTCCGGGTTTCTTGGAGGAGTTTCTTAGGGATTCGGATTTCGATACATTAGAACCCGTTTTGAAGGTGTTGTATGAGAATTTAAGGGGCAGTGTTCTTAACGTTTCAGCTCTTGGGAACTTCCAGCAGCCCATTAGGGCACTTAGGTTTCTGGTTAGCTTTCCTGTTGGGGCTAAATCTTTGGTGAATCATCCATGGTGGATTCCCACTAAGCAATTTACCAATGGCCGTGTTATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTTAGTGCTTTACCTGACCAAGGGCTTTTTAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCGGAAGCATCGACTCGTAGACCATCTGATTTGTTGTCTTCATTCACTACAATTAAAACAGTGATGAATAACTTATATGATGGACTTGCCGAGGTTCTTCTTTCTCTTCTTAAGAACACCGACACTCGCGAAAAGGTTCTTGAGTATCTTGCAGAGGTCATAAATAGAAACTCCGCAAGGGCTCATATTCAGGTTGATCTTCTCTCATGTGCAAGTTCAGGCATGTTTGTCAATCTCAGTGCCATTATGCTACGTCTATGTGAGCCATTTCTAGATGCAAACTTTAGCAAAAGGGATAAAATTGATTCAAAATATGTATGTTATGGAAACCGCTTGGAGTTTAGGGGATTAACTGCTCTACATGCGTCGACAGAAGAAGTTATTGAGTGGATTAATAATGGTTTGAAAACGAATAACTCCGGGCAGTCCAGCGATAGCGAAAGTCGTTTGCTGCAATCCCAAGAAGCCACGAGTTCTGGCAGTAATGCTACTGGATCTTCTACTGCAAAGGCTTCCAGTAGTGATAAGACTAGGTACCCTTTCATATGCGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTCTGAAGATACGCTGTCCACGCTCAAAGCCATGCAGGGACAAGGGCCTGCTCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCGCAGGAAAAACTTTGTTATGAAGCTCAAATACTGAGGGATGGGACTCTAATCCAGGAAGCTCTTACTTTCTATCGATTAATGGTCATATGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGGATTCCAAAAGCTTTGGATGGTGTCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCTAGTCCAGAATATATCACAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCCCGTAGAAGTGGTTCATCCGTAACCGCAACATTATTTGAAGGTCACCAACTATCACTTGAGTATCTTGTTAGGAATCTTTTGAAGCTCTATGTGGACATGGAATTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCATCGTAATGCGTGGAGGATGATTGCAAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTCAATAAGATTCTCCAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACCATAGAATGGGAGCGGCGACCTGCTCAAGAGAGGCAGGAGAGAACTAGGCTGTTTCACTCCCAAGAAAATATCATCCGGATCGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACGTCGGAGCAAATTACAGCTCCTTTCCTACTTCCAGAGATGGTCGATAGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCCCAACGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAAAGAGTTGCTCAAGCAGATTGTTCATATATACGTTCATCTAGCAAGAGGCGATACGGAGAATATTTTCCCTGCTGCCATTTCAAAGGACGGCAGATCATACAATGAGCAGTTATTCAGTGCTGCAGCAAATGTTCTTACACGAATTGGAGAAGATGGTAGGATAATTCAAGAATTTATTGCTCTTGGTAATAAAGCGAAAGATGCAGCCTCAGAGGCCATGGATGCTGAAGCTACTCTCGGTGATATACCGGACGAATTCCTTGACCCGATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCTGTCATTCAAAGACATCTCCTCAGCGATAGCACCGACCCGTTTAACCGGTCTCATCTGACTTCGGACATGCTCATACCGGACGAAGAACTGAAAGCAAGAATCGAAGAGTTCATCAGGTCACAAGAATTGAAGAGGGGGGTTGGAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTAA 3096 43.7 MATSKPQRSPEEVEDIILRKVFLISLTDSPISDSRIVYLEQTAAELMSESKELRISRDVIERIIIDRLSGDFPSAEPAFQYLTGCYSRAQDESKKIASMKDKNLRSEIELSLKQAKKLTVSYCRIHLGNPELFSGGDLIDTQSTTSPLLPLIFAEVGSSIDGFGASTSGASHCPPGFLEEFLRDSDFDTLEPVLKVLYENLRGSVLNVSALGNFQQPIRALRFLVSFPVGAKSLVNHPWWIPTKQFTNGRVIEMTSILGPFFHVSALPDQGLFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTDTREKVLEYLAEVINRNSARAHIQVDLLSCASSGMFVNLSAIMLRLCEPFLDANFSKRDKIDSKYVCYGNRLEFRGLTALHASTEEVIEWINNGLKTNNSGQSSDSESRLLQSQEATSSGSNATGSSTAKASSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQEALTFYRLMVIWLVGLVGGFKMPLPSSCPMEFASMPEHFVEDAMELLIFASRIPKALDGVNLDDFMNFIIMFMASPEYITNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDMEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILQLKELEAEMSNTIEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDTENIFPAAISKDGRSYNEQLFSAAANVLTRIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPDEELKARIEEFIRSQELKRGVGMQSSKATIQPTSGEMLID 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44662429 44673939 - Sed0005067.1 Sed04g3522 712125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3522 1031 Coils Coil 514 541 - -
Sed04g3522 1031 SMART Ubox_2 939 1002 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3522 1031 CDD RING-Ubox_UBE4A 938 1006 - -
Sed04g3522 1031 SUPERFAMILY RING/U-box 928 1006 - -
Sed04g3522 1031 Pfam U-box domain 936 1006 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3522 1031 PANTHER UBIQUITINATION FACTOR E4 8 1009 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro)
Sed04g3522 1031 Pfam Ubiquitin elongating factor core 258 919 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Sed04g3522 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 935 1011 IPR013083 -
Sed04g3522 1031 ProSiteProfiles U-box domain profile. 935 1009 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3522 1031 MobiDBLite consensus disorder prediction 423 457 - -
Sed04g3522 1031 FunFam Ubiquitin conjugation factor e4 a 935 1012 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3522 K10597 - csv:101211398 1815.43