Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3535 ATGGGGTGTTTGGTTAGCAAAGAAGCGTCTGCTAGAAGTGTAGAACCCCCTGTTGATAATGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGTTGAGCGTGTCCTGGAAACAGAAGTGGAGCATGTTAGTGCTAATGTAGAGGAGCATGTAAATGTGAGCAAGGAGGAAGAGAAGAAGGCTGATGGGGATCGGGATCGCCAACGGGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCTGGTAACTTACCGAACCAATCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCAGCATGGCTCACAGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACATTTGAAAAAATTGATAAGATTGGACAAGGAACATATAGCAACGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCGGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATTCTTAGGAGATTAAATCATAATAATGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACCTGGTGTTTGAGTATATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCAACAATAAAGTTTACTGAATCGCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACATTGTCACAATCGTCGTGTGCTTCACCGTGACATCAAAGGATCTAATCTTCTCATTGACAGTGGGGGAGTGCTTAAGATTGCTGACTTTGGATTGGCTTCTATCTTTGATCCAAATCACAAGCACCCAATGACTAGTCGGGTAGTTACCTTATGGTATCGACCTCCTGAGCTTCTTCTTGGAGCAACTGATTATGGTGTTGGGGTAGACCTCTGGAGTGCTGGGTGTATATTGGCCGAGTTACTAGCTGGGAGGCCTATCATGCCTGGCCGTACAGAGGTAGAGCAGCTACACAAGATATACAAGCTATGTGGATCCCCTTCAGATGAATATTGGAAAAGATCAAAACTGCCAAATGCAACCTTATTTAAGCCCCGAGATCCTTATAAAAGATGTATAAAGGAGACGTTTAAAGATTTCCCGCCATCATCACTGCCACTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACGGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCTCACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAAACGGGACGATGAAGCTCGGAGACTAAGGGCAGCTAATAAAGCTCAGGGAAATGGCGTAAAGAAAACTCGCACTCGTGTTAGGGCTATTCCAGCACCCGAAGCCAATGCCGAAATACAAACAAATATCGACAGAAGACGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCACACCAGGATGGAGCACTTGGCTTTACGCTAGGATATTCCCGTCATATCGACCCGTCCGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAATCCAAGCCTGGTCTGGTCCACTGGTTCCTGGTTCTGGCACTGAGGCTCCTTCTAGGCACAAGAAGCATGTGGGAGGTAAAGGCAAGAAGATCATGGTCTAA 1695 45.55 MGCLVSKEASARSVEPPVDNGKRNQITESRVQVERVLETEVEHVSANVEEHVNVSKEEEKKADGDRDRQRAERRKSRKVPRPGNLPNQSQGEQVAAGWPAWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPTIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRSKLPNATLFKPRDPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACSPSNLPKYPPSKEMDARKRDDEARRLRAANKAQGNGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPIQAWSGPLVPGSGTEAPSRHKKHVGGKGKKIMV 564
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 44766268 44776440 + Sed0018272.1 Sed04g3535 712138
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3535 564 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Sed04g3535 564 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3535 564 MobiDBLite consensus disorder prediction 42 93 - -
Sed04g3535 564 Gene3D Transferase(Phosphotransferase) domain 1 204 445 - -
Sed04g3535 564 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Sed04g3535 564 Coils Coil 54 74 - -
Sed04g3535 564 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Sed04g3535 564 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3535 564 CDD STKc_CDK9_like 121 405 - -
Sed04g3535 564 SMART serkin_6 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3535 564 MobiDBLite consensus disorder prediction 42 72 - -
Sed04g3535 564 PANTHER CELL DIVISION PROTEIN KINASE 120 405 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed04g3535 564 MobiDBLite consensus disorder prediction 540 564 - -
Sed04g3535 564 MobiDBLite consensus disorder prediction 415 434 - -
Sed04g3535 564 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Sed04g3535 564 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Sed04g3535 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3535 564 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3535 Sed-Chr4:44766268 Sed08g1643 Sed-Chr8:31598316 3.70E-229 dispersed
Sed04g3535 Sed-Chr4:44766268 Sed02g1222 Sed-Chr2:49097689 2.20E-234 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79096 PF00069 Pkinase 5.10E-68 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3535 K08819 - csv:101215893 1055.82