Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g3536 | ATGGTGCCTGTTTTGAGCTATGTTGCGTCCAAGTGGCAAGCGTTGGCCACTTCTGATCATGCCTCTGTGGTTTCCATTAACTTATTTGTAGCTCTTTTATGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGTTGAACGAGTCGATCACTGCCCTCTTAATTGGTCTGTTTACCGGAGTCATTATTTTACTGGTCAGTGGTGGTAAAAGTTCCCATCTATTGCTCTTTAGCGAAGACGTGTTCTTTATTTATCTTCTGCCACCTATCATATTCAATGCTGGGTTTCAGGTAAAAAAGAAGCAGTTCTTTGTTAACTTTATGACAATTATGCTGTTTGGTGCAATTGGTACACTGGTCTCTTGTTTAATCATCTCGCTAGGAGCTTTTCAGTTCTTTAAGATAATGGATGTCGGATCACTAGATATTGCTGATATTTTAGCAATTGGAGCTATATTTGCTGCTACAGATTCCGTATGCACATTGCAGATATTAAACCAGGATGAAACGCCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTCAGTAAAGTCGATGCAACAGTTGGTTTTCATTTTCTCGGGAGCTTCTTTTATTTGTTTTCGATGAGCACTCTACTCGGAGTGTTTGTTGGGCTGCTGAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATACTCATGGCATACCTTTCATATATGCTGGCTGAATTGTTAGATTTGAGTGGCATTCTCACTGTGTTCTTTTGTGGAATTGTAATGTCACATTATACTTGGCACAATGTGACTGAGAGTTCTAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCGGAGGCATTTATCTTTGTTTATGTTGGCATGGATGCTTTGGACATCGAGAAGTGGAGCTTTGTTAGTGATAGTCCAGGAACATCTGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGCTAAAAAATCGGCTTCCGAGAAAATTACCTTCAAGCAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTCTAGCTTATCATCAGTTCACCAGAGCAGGGCACACTCAACTGCGGGGGAATGCAATGATGATAACTAGTACGACAACAGTTGTTCTTTTCAGCACGATGGTGTTTGGGTTATTGACCAAGCCTCTTATAAACTGGTTGTTACCTCCCCTTAAACACTCCAACAGCATGCTATCAGATCCAGGGACTCCGAAATCATTCTCGGTCCCACTACTAGGAAATCCACAGGATTCAGAGTTGGATCTTGACGTTCCCCACATTACTCGTCCAAGCAGTATCCGTGCACTCCTTGCAACTCCTACACACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCCTTCATGCGTCCAATGTTCGGAGGGCGGGGTTTCGTCCCCTTTGTTCCAGGATCGCCAACCGAAGGGAGTCGACACTGA | 1614 | 42.87 | MVPVLSYVASKWQALATSDHASVVSINLFVALLCACIVIGHLLEETRWLNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDVFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCLIISLGAFQFFKIMDVGSLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDATVGFHFLGSFFYLFSMSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISEAFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLAKKSASEKITFKQQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTTTVVLFSTMVFGLLTKPLINWLLPPLKHSNSMLSDPGTPKSFSVPLLGNPQDSELDLDVPHITRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTEGSRH | 537 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 44791610 | 44798870 | + | Sed0019737.1 | Sed04g3536 | 712139 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g3536 | 537 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3536 | 537 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3536 | 537 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3536 | 537 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3536 | 537 | Gene3D | - | 145 | 197 | - | - | |
| Sed04g3536 | 537 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 19 | 527 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Sed04g3536 | 537 | Pfam | Sodium/hydrogen exchanger family | 32 | 444 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Sed04g3536 | 537 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 446 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g1823 | Sed-Chr4:32986314 | Sed04g3536 | Sed-Chr4:44791610 | 2.20E-215 | dispersed | |
| Sed04g1824 | Sed-Chr4:32986758 | Sed04g3536 | Sed-Chr4:44791610 | 2.20E-215 | dispersed | |
| Sed04g3536 | Sed-Chr4:44791610 | Sed09g1199 | Sed-Chr9:36182154 | 5.30E-201 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g3536 | - | - | - | 0.0 |