Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3545 ATGATGGCTGGAACGAATCAAATCAATCTCAACGACTCCCGGATGGTGGTTCCACTTAATACCTGGGTTCTTATTTCCAACTTTAAGTTGGCTTACAATCTTCTTCGTCGCCCTGATGGGACCTTCAATCGCCATTTGGCAGAGTTTCTCGATCGAAAAGTCCCGGCCAATGCTAACCCTGTCGATGGGACTTTCTCGTTTGATGTCATTATTGATCGTGCTACGAGTCTCCTCTGTAGAATTTATCGACCGGCCATTGTTGCTGGAGGTGAACCTCAGACTACTAACATTGTTGATCTTGAGAAGCCTGTGGATTCTGAGGTTGTTGTTCCTGTTATTGTGTTCTTTCATGGTGGAAGCTTTGCTCATTCGTCTGCTAACAGTGCTATCTATGATACCTTATGTCGCCGATTGGTCAGCCTTTGCAAAGCTGTTGTTGTCTCTGTGAACTACAGGCGTGCACCCGAGAATCGCTATCCATGTGCGTATGATGACGGATGGACTGCACTCAATTGGGTGAATTCAAGATCATGGCTTCAAAGTAAAGACTCCAAAACCTATATTTATCTGGCTGGCGATAGTTCGGGTGGCAACATCGTACACCATGTTGCATCAAGAGCGGTAAAGTCGGGGATCGAAGTATTAGGTAATATACTTCTCAATCCTATGTTTGGAGGGCAGGAAAGAACTAAATCTGAGGTTCAGTTGGATGGAAAGTATTTCGTCACCATTCGGGATAGAGACTGGTATTGGAGGGCTTTCCTCCCTGAAGGGGAAGATAGAGATCATCCAGCATGTAATCCCTTCGGCTCGAGGGGTAATAGCCTCGAAGGAATCAACTTCCCAAAGAGCCTTGTTGTGGTGGCCGGTTTAGATCTCATCCAAGACTGGCAATTGGCTTATGTCAAAGGGCTTGAGAAGGATGGCCAGAAGGTGAAGCTTTTATATCTTGAGCAGGCAACCATTGGCTTCTACTTGCTACCGAATACTGAGCACTTCTATACCGTTATGGACGAGATAAGTGAATTCGTGAGTTTTGACTGA 1044 45.69 MMAGTNQINLNDSRMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVDGTFSFDVIIDRATSLLCRIYRPAIVAGGEPQTTNIVDLEKPVDSEVVVPVIVFFHGGSFAHSSANSAIYDTLCRRLVSLCKAVVVSVNYRRAPENRYPCAYDDGWTALNWVNSRSWLQSKDSKTYIYLAGDSSGGNIVHHVASRAVKSGIEVLGNILLNPMFGGQERTKSEVQLDGKYFVTIRDRDWYWRAFLPEGEDRDHPACNPFGSRGNSLEGINFPKSLVVVAGLDLIQDWQLAYVKGLEKDGQKVKLLYLEQATIGFYLLPNTEHFYTVMDEISEFVSFD 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44853792 44856130 + Sed0021771.1 Sed04g3545 712148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3545 347 SUPERFAMILY alpha/beta-Hydrolases 59 344 IPR029058 -
Sed04g3545 347 Gene3D alpha/beta hydrolase 1 345 IPR029058 -
Sed04g3545 347 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 113 129 IPR002168 GO:0016787(InterPro)
Sed04g3545 347 FunFam Gibberellin receptor GID1 2 346 - -
Sed04g3545 347 Pfam alpha/beta hydrolase fold 113 325 IPR013094 GO:0016787(InterPro)
Sed04g3545 347 PANTHER ARYLACETAMIDE DEACETYLASE 37 338 IPR050466 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009939(PANTHER)|GO:0010325(PANTHER)|GO:0010331(PANTHER)|GO:0048444(PANTHER)
Sed04g3545 347 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 188 200 IPR033140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3545 Sed-Chr4:44853792 Sed07g0379 Sed-Chr7:2849822 2.60E-148 dispersed
Sed04g3545 Sed-Chr4:44853792 Sed05g2332 Sed-Chr5:35787362 2.50E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3545 K14493 - csv:101213253 631.713