Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3550 ATGCGACCAATTTTGATGAAAGGCCATGAACGGCCATTGACGTTCCTCAAGTACAACAGAGATGGCGATCTCCTCTTCTCCTGCGCCAAGGATCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAGCGATTGGGCACTTATCGCGGCCACAATGGCGCCGTTTGGTGCTGCGACGTATCCAGAGATTCTATGCGGCTCATCACCGGCAGCGCGGATCAGACGGCGAAGCTTTGGAATGTTCAATCTGGACAGCAACTCTTCACTTTCAATTTTGACTCCCCTGCTAGGGCTGTTGATTTCTCTGTCGGCGATAAGCTTGCTGTGATTACCACTGATCCTTTCATGGATTTGCCCTCTGCTATTCACGTTAAACGTATTGCCAGAGATCCCTCCGAACAGACTGGTGAATCTGTCCTCCTCCTTAAGGGTCCTCAGGGAAGAATCAACAGAGCTGTTTGGGGTCCTCTAAACAAGACCATTATAAGTGCTGGAGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACTGGTAAACTTTTAAAAGAATCAGATAAGGAGACAGGCCATAAGAAAACAATAACATCCCTTGTGAAATCCTCTGATGGTTCGTATTTTATCTCTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATATTAGAACGTTGACACTCATCAAGACCTATTTGACAGAACGCCCGGTCAATGCAGTTACAATGTCCCCACTTCTTGACCATGTGGTGCTTGGTGGTGGTCAAGATGCTTCATCTGTGACAACGACCGATCATCGTGCAGGGAAGTTCGAAGCTAAATTTTATGATAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATTAACGCTCTGGCTTTCAATCCTGATGGGAAGAGTTTTTCGAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTCGACCCCGATTACTTCAACATCAAGATGTAA 981 46.99 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQSGQQLFTFNFDSPARAVDFSVGDKLAVITTDPFMDLPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLVKSSDGSYFISGSLDKSARLWDIRTLTLIKTYLTERPVNAVTMSPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKM 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44911276 44915439 - Sed0005188.1 Sed04g3550 712153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Sed04g3550 326 SMART WD40_4 135 174 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 SMART WD40_4 1 38 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 SMART WD40_4 41 80 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 SMART WD40_4 177 219 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 SMART WD40_4 277 316 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 SMART WD40_4 222 262 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Sed04g3550 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515(InterPro)
Sed04g3550 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 323 - GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER)
Sed04g3550 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Sed04g3550 326 Gene3D - 1 326 IPR015943 GO:0005515(InterPro)
Sed04g3550 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Sed04g3550 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Sed04g3550 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Sed04g3550 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 Pfam WD domain, G-beta repeat 137 174 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 Pfam WD domain, G-beta repeat 42 80 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 Pfam WD domain, G-beta repeat 6 37 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 CDD WD40 7 314 - -
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Sed04g3550 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515(InterPro)
Sed04g3550 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2097 Sed-Chr3:15153826 Sed04g3550 Sed-Chr4:44911276 5.70E-190 dispersed
Sed12g0443 Sed-Chr12:2668625 Sed04g3550 Sed-Chr4:44911276 1.10E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3550 K03246 - csv:101211648 648.277