Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3556 ATGGTGGCTGCCAAGGCTAACGTCTGCCTCGATGCGGGTTTGCCTACTGAGGAAAATCGCACCCGTAGAAGTGCAATGGGAAGTTTTAAGGTTTATACGGAGAAAGATAAGGTTAAAGCTGATTCCAGTTGCAAGAAACCTGTAACAATAAAGCCTTCAGCAGATTATACGATTCAACCAAAGTTTAAAGGAGGCCTGCAACGCTCAGAGAAGAACATAGAGAAAATTGAAGTATCTGGGGCCAAAAGTATGGGAAGAAGAGCACTGGCAGATGTAAGTAACGTCCGAGGCAACTCTTCAAGGAAAACAATGCAAGATGGCTCCAAGCACAAGGCTTCAACTGGGACTAGAGTTAGCACTGCTGGCGTCAGTGTCTCCTTTAGGAGATCATTGGGGAAAACAGTAAAGAATGCAGGGGAAGCTGCAGGTGACTTGCATGCTTCAGAAAAAGGGCGTGCTAGAGATTCGAAAGGTTGCTCGGTTTATGAAAGAAACAAAACAGATGGTCCATGCTGCAATTCCAATACTGCAAATGCCAGGAGAACTAAAAAGATCTCTCTAGTGCAAACGAGGAGATCTTTACCAATGTTAAAGAGGATGAACCAGACTAATGCTCCCAACACAAAAGTTGATAATACTGTGAAGACAGAAAAGACCAATAGATCTCAGGGATGTTTGAGTAAGTCCGGCAAGAATGCAGCAGCCCAGACAAAAAATACCAGAGGTCAACTTTGGAATAACCGAGTCAGCGGTGGCTTCAATACAATGGGTCAAGCCAAGGTGGAGACAAATCCACTTTCGAAAAAGTCTAGTAAGCCCATTGTAAGGACCACGAAGAAGGTTTCTGGTATTCAAGAGGCACCAAAATCCAAATATGCATCAGTCGTAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAATCCTCGGCACCTCTCTGTGAGGATACAACTAATGAGTCCATTCAAGGAAAGGATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACAGATTTCACTTTCAGGAAAAAAGGTGGTCGTAGAAGATCGTATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGACAAATGTGCTGACGTTACGGAGATAGCTAACCTACCAAGTATTGACAATGACTACAACCAAATGGAGGTTTCTGAATATGTTGAGGAAATATATCATTATTATTGGGTTATGGAGGCACAAAGTTCATCTCTTTCAAATTACTTATCAATACAAGAAGAAATCACCCACCATATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCAAGTCGTGATCAAGAAGAATGAAATGCAGTTAGTTGGTCTTACTGCATTGTTATTGGCATCCAAATATGAAGATTTTTGGCATCCAAGGGTTAAAGATCTAATTAGCATTTCAGCCGAGTCCTACTCAAGAGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAATTGAAGTTTCGGTTGAACATGCCTACTCCATATGTTTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCTAATAACACTCAGCTTGAACACTTATCATTTTACTTGATTGAGCTGGCCTTGGTTGAATACGAAGCTCTTAGTTTCAAGCCGTCGCTGTTATGTGCATCGGCTCTATTTGTCGCACGGTGTACGCTGCGGATAAGTCCATACTGGACTCCGCAACTAAACAAACATACGCGCTACGAAGTGTCCGAACTAAGAGAATGTGCTGAGATGATCTTGAAAATTCACCAATCTGCTCAAATGAGACAGCTGAAAGTCACGTATGAGAAGTACTTGAAACCTGATTTCAAAGGTGTTGCGGTTGTTAAGCACCTGAGCAAGCTGCCTCTTTGA 1944 41.98 MVAAKANVCLDAGLPTEENRTRRSAMGSFKVYTEKDKVKADSSCKKPVTIKPSADYTIQPKFKGGLQRSEKNIEKIEVSGAKSMGRRALADVSNVRGNSSRKTMQDGSKHKASTGTRVSTAGVSVSFRRSLGKTVKNAGEAAGDLHASEKGRARDSKGCSVYERNKTDGPCCNSNTANARRTKKISLVQTRRSLPMLKRMNQTNAPNTKVDNTVKTEKTNRSQGCLSKSGKNAAAQTKNTRGQLWNNRVSGGFNTMGQAKVETNPLSKKSSKPIVRTTKKVSGIQEAPKSKYASVVIKSISSTASSSKIVESSAPLCEDTTNESIQGKDASEPTCNPSTSTDFTFRKKGGRRRSYTSLLVAGAKLLDKCADVTEIANLPSIDNDYNQMEVSEYVEEIYHYYWVMEAQSSSLSNYLSIQEEITHHMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSQVVIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNNTQLEHLSFYLIELALVEYEALSFKPSLLCASALFVARCTLRISPYWTPQLNKHTRYEVSELRECAEMILKIHQSAQMRQLKVTYEKYLKPDFKGVAVVKHLSKLPL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44941154 44949006 - Sed0008261.1 Sed04g3556 712159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3556 647 CDD CYCLIN_CCNB1-like_rpt1 390 519 - -
Sed04g3556 647 FunFam putative cyclin-B3-1 isoform X3 520 646 - -
Sed04g3556 647 MobiDBLite consensus disorder prediction 91 120 - -
Sed04g3556 647 Gene3D - 516 646 - -
Sed04g3556 647 SUPERFAMILY Cyclin-like 525 645 IPR036915 -
Sed04g3556 647 SMART Cyclin_C_2 524 642 IPR004367 -
Sed04g3556 647 MobiDBLite consensus disorder prediction 216 248 - -
Sed04g3556 647 SMART cyclin_7 528 611 IPR013763 -
Sed04g3556 647 SMART cyclin_7 431 515 IPR013763 -
Sed04g3556 647 SUPERFAMILY Cyclin-like 386 522 IPR036915 -
Sed04g3556 647 Pfam Cyclin, N-terminal domain 396 522 IPR006671 -
Sed04g3556 647 FunFam Cyclin N-terminal domain containing 2 411 519 - -
Sed04g3556 647 ProSitePatterns Cyclins signature. 426 457 IPR048258 -
Sed04g3556 647 Gene3D - 410 515 - -
Sed04g3556 647 Pfam Cyclin, C-terminal domain 524 640 IPR004367 -
Sed04g3556 647 PANTHER CYCLINS 379 628 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed04g3556 647 MobiDBLite consensus disorder prediction 319 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3556 Sed-Chr4:44941154 Sed14g1250 Sed-Chr14:21622118 4.40E-53 dispersed
Sed04g3556 Sed-Chr4:44941154 Sed10g1066 Sed-Chr10:9737830 2.00E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3556 K21777 - csv:101213908 937.176