Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3556 ATGGTGGCTGCCAAGGCTAACGTCTGCCTCGATGCGGGTTTGCCTACTGAGGAAAATCGCACCCGTAGAAGTGCAATGGGAAGTTTTAAGGTTTATACGGAGAAAGATAAGGTTAAAGCTGATTCCAGTTGCAAGAAACCTGTAACAATAAAGCCTTCAGCAGATTATACGATTCAACCAAAGTTTAAAGGAGGCCTGCAACGCTCAGAGAAGAACATAGAGAAAATTGAAGTATCTGGGGCCAAAAGTATGGGAAGAAGAGCACTGGCAGATGTAAGTAACGTCCGAGGCAACTCTTCAAGGAAAACAATGCAAGATGGCTCCAAGCACAAGGCTTCAACTGGGACTAGAGTTAGCACTGCTGGCGTCAGTGTCTCCTTTAGGAGATCATTGGGGAAAACAGTAAAGAATGCAGGGGAAGCTGCAGGTGACTTGCATGCTTCAGAAAAAGGGCGTGCTAGAGATTCGAAAGGTTGCTCGGTTTATGAAAGAAACAAAACAGATGGTCCATGCTGCAATTCCAATACTGCAAATGCCAGGAGAACTAAAAAGATCTCTCTAGTGCAAACGAGGAGATCTTTACCAATGTTAAAGAGGATGAACCAGACTAATGCTCCCAACACAAAAGTTGATAATACTGTGAAGACAGAAAAGACCAATAGATCTCAGGGATGTTTGAGTAAGTCCGGCAAGAATGCAGCAGCCCAGACAAAAAATACCAGAGGTCAACTTTGGAATAACCGAGTCAGCGGTGGCTTCAATACAATGGGTCAAGCCAAGGTGGAGACAAATCCACTTTCGAAAAAGTCTAGTAAGCCCATTGTAAGGACCACGAAGAAGGTTTCTGGTATTCAAGAGGCACCAAAATCCAAATATGCATCAGTCGTAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAATCCTCGGCACCTCTCTGTGAGGATACAACTAATGAGTCCATTCAAGGAAAGGATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACAGATTTCACTTTCAGGAAAAAAGGTGGTCGTAGAAGATCGTATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGACAAATGTGCTGACGTTACGGAGATAGCTAACCTACCAAGTATTGACAATGACTACAACCAAATGGAGGTTTCTGAATATGTTGAGGAAATATATCATTATTATTGGGTTATGGAGGCACAAAGTTCATCTCTTTCAAATTACTTATCAATACAAGAAGAAATCACCCACCATATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCAAGTCGTGATCAAGAAGAATGAAATGCAGTTAGTTGGTCTTACTGCATTGTTATTGGCATCCAAATATGAAGATTTTTGGCATCCAAGGGTTAAAGATCTAATTAGCATTTCAGCCGAGTCCTACTCAAGAGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAATTGAAGTTTCGGTTGAACATGCCTACTCCATATGTTTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCTAATAACACTCAGCTTGAACACTTATCATTTTACTTGATTGAGCTGGCCTTGGTTGAATACGAAGCTCTTAGTTTCAAGCCGTCGCTGTTATGTGCATCGGCTCTATTTGTCGCACGGTGTACGCTGCGGATAAGTCCATACTGGACTCCGCAACTAAACAAACATACGCGCTACGAAGTGTCCGAACTAAGAGAATGTGCTGAGATGATCTTGAAAATTCACCAATCTGCTCAAATGAGACAGCTGAAAGTCACGTATGAGAAGTACTTGAAACCTGATTTCAAAGGTGTTGCGGTTGTTAAGCACCTGAGCAAGCTGCCTCTTTGA 1944 41.98 MVAAKANVCLDAGLPTEENRTRRSAMGSFKVYTEKDKVKADSSCKKPVTIKPSADYTIQPKFKGGLQRSEKNIEKIEVSGAKSMGRRALADVSNVRGNSSRKTMQDGSKHKASTGTRVSTAGVSVSFRRSLGKTVKNAGEAAGDLHASEKGRARDSKGCSVYERNKTDGPCCNSNTANARRTKKISLVQTRRSLPMLKRMNQTNAPNTKVDNTVKTEKTNRSQGCLSKSGKNAAAQTKNTRGQLWNNRVSGGFNTMGQAKVETNPLSKKSSKPIVRTTKKVSGIQEAPKSKYASVVIKSISSTASSSKIVESSAPLCEDTTNESIQGKDASEPTCNPSTSTDFTFRKKGGRRRSYTSLLVAGAKLLDKCADVTEIANLPSIDNDYNQMEVSEYVEEIYHYYWVMEAQSSSLSNYLSIQEEITHHMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSQVVIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNNTQLEHLSFYLIELALVEYEALSFKPSLLCASALFVARCTLRISPYWTPQLNKHTRYEVSELRECAEMILKIHQSAQMRQLKVTYEKYLKPDFKGVAVVKHLSKLPL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44941154 44949006 - Sed0008261.1 Sed04g3556 712159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3556 647 CDD CYCLIN_CCNB1-like_rpt1 390 519 - -
Sed04g3556 647 FunFam putative cyclin-B3-1 isoform X3 520 646 - -
Sed04g3556 647 MobiDBLite consensus disorder prediction 91 120 - -
Sed04g3556 647 Gene3D - 516 646 - -
Sed04g3556 647 SUPERFAMILY Cyclin-like 525 645 IPR036915 -
Sed04g3556 647 SMART Cyclin_C_2 524 642 IPR004367 -
Sed04g3556 647 MobiDBLite consensus disorder prediction 216 248 - -
Sed04g3556 647 SMART cyclin_7 528 611 IPR013763 -
Sed04g3556 647 SMART cyclin_7 431 515 IPR013763 -
Sed04g3556 647 SUPERFAMILY Cyclin-like 386 522 IPR036915 -
Sed04g3556 647 Pfam Cyclin, N-terminal domain 396 522 IPR006671 -
Sed04g3556 647 FunFam Cyclin N-terminal domain containing 2 411 519 - -
Sed04g3556 647 ProSitePatterns Cyclins signature. 426 457 IPR048258 -
Sed04g3556 647 Gene3D - 410 515 - -
Sed04g3556 647 Pfam Cyclin, C-terminal domain 524 640 IPR004367 -
Sed04g3556 647 PANTHER CYCLINS 379 628 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed04g3556 647 MobiDBLite consensus disorder prediction 319 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3556 K21777 - - csv:101213908 937.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3556 Sed-Chr4:44941154 Sed14g1250 Sed-Chr14:21622118 4.40E-53 dispersed
Sed04g3556 Sed-Chr4:44941154 Sed10g1066 Sed-Chr10:9737830 2.00E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1155 Blo04g00460 . . . . . . . . . . . . . Sed04g3556 . . Bhi05g01991 Tan02g0023 Cmetu01g1284 . Hepe02g0012 . . . . . . . . . . . . . . Csa07g01213 . . . . . . Bpe15g00922 . Bma03g00492 . . . . . . . . Cpe15g00905 . . . . . . . . . . . . . . . . . Chy01g00850 Cme01g01500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012027 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 30