Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3557 ATGGAGGACGGATTCGCAGCTGAGCGTCTCTTCAATCAAGGATTCTCCTACACCTACGACGACGTCATCTGCCTTCCTCACTACATCGACTTCCCCACCGATTCCGTCCAACTCGCCACTCAACTCACCCGCAACATCTCCCTCTCCATCCCCTGCGTCTCCTCCCCCATGGACACCGTCACCGAAGCTTACATGGCCTCCGCCATGGCCGCTCTCGGCGGCATCGGCATCATCCACTCCAACGCCACTCCCTCCCACCAATCCGCCATGGTTCGCGCCGCTAAAGCTCGACGAGTTCCCATCCTCTCCAATCCGCTCTTCAAATCCCCCTTCGATCGGATCGATTCCGAAGAGGATTTCGCCTCTTCGCCTTTCGTTTTAGTTACCGAGTCTGGTTCCTCGAACTCGAAGCTTCTCGGCCATGTCTCGCACGCGGATTGGACTGCTCAGGGCGATAAGGAAGTTAAGATTTATGATTATATGGTTAATTCCGGGGTTTCGGTTCCGTGGAACTATGATTTAGGGCAAGTGGAGGCGTTTTTGGAGGAGAAGAAGGCGGAATTTGTGCCGTTGTTGAAGGATGGTGAAGTTGTTGATGCTGTGACGAAGTCGGAAGTAGAGAGAATCAGGAGTTATCCGAAGCTCGGTGTTGGTTCCGTTGCTGCGGATGGTTCGTGGCTCGTCGGGGCTTCCATTGGAACTAGGGAACATGATAAGGAGAGGCTGAAACATTTGGTGCAGGCTGGTATAAACGTAGTGGTGTTAGATAGTTCGCAGGGGAACTCTAGTTATCAGATTGATATGATCAAGTATGTGAAGCGGACGTATCCTGAGCTGGACGTGATTGGCGGGAATGTTGTTACGATGGCGCAGGCACAGAATTTGATTCAAGCCGGCGTCGATGGATTGCGGGTTGGGATGGGCTCTGGTTCTATCTGCACCACGCAGGAGGTTTGTGCGGCCGGACGGGGACAGGCAACTGCGGTTTACAAGGTGTCATTAGTTGCTTCTCAAAGTGGTGTTCCTGTCATTGCTGATGGTGGAATTTCAAACTCTGGACATATTGTTAAGGCTCTAGTTCTTGGTGCATCCACGGTAATGATGGGAAGTTTCTTGGCTGGAAGCACCGAGTCCCCCGGCACCTTCGAAACTAAGAATGGTCAGCGGGTGAAGAAGTATCGGGGTATGGGGTCGTTAGAAGCAATGACCAAAGGCAGTGATGCCAGGTACTTGGGGGATACTGCAACCCTTAAGATAGCTCAGGGGGTTGTTGGAGCAGTTGCTTATAAGGGTTCAGTCCTGAAGTTCATACCCTACTCAATGCAAGCAGTGAAGCAAGGGTTCCAAGATCTTGGTGCTTCCTCCATCAAATCTGCCCATGATCTCTTAAGCTCAAAGGTCCTAAGACTGGAGGTCCGTTCGGGAGCTGCACAGGTCGAAGGTGGAATTCATGGACTGGTGTCGTATGAAAAGAAATCGTTTTGA 1485 51.78 MEDGFAAERLFNQGFSYTYDDVICLPHYIDFPTDSVQLATQLTRNISLSIPCVSSPMDTVTEAYMASAMAALGGIGIIHSNATPSHQSAMVRAAKARRVPILSNPLFKSPFDRIDSEEDFASSPFVLVTESGSSNSKLLGHVSHADWTAQGDKEVKIYDYMVNSGVSVPWNYDLGQVEAFLEEKKAEFVPLLKDGEVVDAVTKSEVERIRSYPKLGVGSVAADGSWLVGASIGTREHDKERLKHLVQAGINVVVLDSSQGNSSYQIDMIKYVKRTYPELDVIGGNVVTMAQAQNLIQAGVDGLRVGMGSGSICTTQEVCAAGRGQATAVYKVSLVASQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTESPGTFETKNGQRVKKYRGMGSLEAMTKGSDARYLGDTATLKIAQGVVGAVAYKGSVLKFIPYSMQAVKQGFQDLGASSIKSAHDLLSSKVLRLEVRSGAAQVEGGIHGLVSYEKKSF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44954066 44958015 + Sed0007161.1 Sed04g3557 712160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3557 494 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 303 315 IPR015875 GO:0016491(InterPro)
Sed04g3557 494 Pfam IMP dehydrogenase / GMP reductase domain 16 484 IPR001093 GO:0003824(InterPro)
Sed04g3557 494 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 2 493 IPR005990 GO:0003938(InterPro)|GO:0003938(PANTHER)|GO:0005737(PANTHER)|GO:0006164(InterPro)|GO:0006183(PANTHER)
Sed04g3557 494 Hamap Inosine-5'-monophosphate dehydrogenase [guaB]. 16 492 IPR005990 GO:0003938(InterPro)|GO:0006164(InterPro)
Sed04g3557 494 NCBIfam IMP dehydrogenase 16 460 IPR005990 GO:0003938(InterPro)|GO:0006164(InterPro)
Sed04g3557 494 Gene3D Aldolase class I 4 494 IPR013785 -
Sed04g3557 494 SMART IMPDH_2 15 484 - -
Sed04g3557 494 FunFam IMP dehydrogenase, putative 4 494 - -
Sed04g3557 494 CDD IMPDH 16 473 IPR001093 GO:0003824(InterPro)
Sed04g3557 494 SUPERFAMILY CBS-domain pair 125 208 IPR046342 -
Sed04g3557 494 PIRSF IMPDH 4 494 IPR005990 GO:0003938(InterPro)|GO:0006164(InterPro)
Sed04g3557 494 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 7 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3557 K00088 - - csv:101217193 886.715
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1164 . Blo13g00604 . . . . Bma08g00823 . . . . . . . Sed04g3557 . . Bhi05g01988 Tan02g0021 Cmetu01g0138 Lac12g0035 Hepe02g0009 . . . . . . . . . . . . . . Csa07g01216 . . . . . . . . . . . . . . . . . Cpe15g00908 . . . . . . . . . . . . . . . . . Chy01g00847 Cme01g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007875 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33