Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed04g3560	ATGTTCCATGCCAAGAAAGCGCCGCCGAGTATGAATTCGGGTCACGAGCGAGGCATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCGAAACCCCGCCTCCGATGGACCATCGAGCTTCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCTGATAAGGCAACCCCTAAGACAATCATGAGGGTTATGGGTGTAAAGGGTCTTACTCTCTACCACCTCAAGAGCCATCTTCAGAAATTTAGACTGGGAAAGCAGCCTCATAAGGAATTCATTGATCATAATTCTATGAAGGATGGTATGAGAGCTCCAGGTCTTGAACTTCATCGAAACACAGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTACAGTTACGAATCGAAGCACAAGGGAAGTACATGCAAAGCATATTAGAGAAGGCTTGCCAAACCCTCGCGGGCGAAAACATGGCGGCATCGAGTGGCTACAAGCCAATGGGAGCAATCCCAAACAACAACCAACAAGCCGGCAACGGCGGCGGCATTGGAATTAGCGACATGAGCGGAGGGATCTCCCCGATGGGCTTCCCTTCGTTTCAAGACCTAAACCTCTACGGAGGCGACCAGCTCGATCTTCACCAAAACGTGGATAATTTCATGCCCCACAACGACAGCCTACTATGCTTGGGAAAGTTAAAGAAGTCAAGGCCAAACTACGGGGGGTCGGGAAACAAAGGCGGGTTGGACTGGGCGGACGATCTCCGGCTGCCGTCGTGCGTCGGGCAGCAAGACGAGGACGAGTTCAAAGGCATGGTGGAGAGAGATCATTTGGAGGAAATGTATGAGGCCAAACCACAAGCGGATGAAAATGAGAACAATAATAATGTGTCCTTAAAGCTTCAGAGACCGTCCCCTAGAAGGGCACCCCTTGCGGCAGATAGGGCTAACCAGCCTCTAATTACCACACTTTCACCTTTTGGTTAA	1041	51.39	MFHAKKAPPSMNSGHERGMCVQGDSGLVLTTDPKPRLRWTIELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFIDHNSMKDGMRAPGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASSGYKPMGAIPNNNQQAGNGGGIGISDMSGGISPMGFPSFQDLNLYGGDQLDLHQNVDNFMPHNDSLLCLGKLKKSRPNYGGSGNKGGLDWADDLRLPSCVGQQDEDEFKGMVERDHLEEMYEAKPQADENENNNNVSLKLQRPSPRRAPLAADRANQPLITTLSPFG	346

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	44975886	44978548	-	Sed0020908.1	Sed04g3560	712163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed04g3560	346	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	31	91	IPR017930	-
	Sed04g3560	346	MobiDBLite	consensus disorder prediction	302	346	-	-
	Sed04g3560	346	FunFam	Myb family transcription factor	33	91	-	-
	Sed04g3560	346	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	34	89	IPR006447	GO:0003677(InterPro)
	Sed04g3560	346	Pfam	Myb-like DNA-binding domain	36	86	IPR001005	-
	Sed04g3560	346	Pfam	MYB-CC type transfactor, LHEQLE motif	130	170	IPR025756	-
	Sed04g3560	346	Gene3D	-	33	91	-	-
	Sed04g3560	346	MobiDBLite	consensus disorder prediction	306	320	-	-
	Sed04g3560	346	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	8	259	IPR046955	GO:0003700(InterPro)
	Sed04g3560	346	SUPERFAMILY	Homeodomain-like	33	89	IPR009057	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed04g3560	Sed-Chr4:44975886	Sed05g3314	Sed-Chr5:42487955	8.10E-78	dispersed
	Sed12g0383	Sed-Chr12:2306597	Sed04g3560	Sed-Chr4:44975886	3.30E-06	dispersed
	Sed04g3560	Sed-Chr4:44975886	Sed04g3561	Sed-Chr4:44975886	9.30E-191	tandem

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	38353	PF00249	Myb_DNA-binding	5.20E-06	CL0123	Sed	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed04g3560	-		-	-	0.0