Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3560 ATGTTCCATGCCAAGAAAGCGCCGCCGAGTATGAATTCGGGTCACGAGCGAGGCATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCGAAACCCCGCCTCCGATGGACCATCGAGCTTCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCTGATAAGGCAACCCCTAAGACAATCATGAGGGTTATGGGTGTAAAGGGTCTTACTCTCTACCACCTCAAGAGCCATCTTCAGAAATTTAGACTGGGAAAGCAGCCTCATAAGGAATTCATTGATCATAATTCTATGAAGGATGGTATGAGAGCTCCAGGTCTTGAACTTCATCGAAACACAGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTACAGTTACGAATCGAAGCACAAGGGAAGTACATGCAAAGCATATTAGAGAAGGCTTGCCAAACCCTCGCGGGCGAAAACATGGCGGCATCGAGTGGCTACAAGCCAATGGGAGCAATCCCAAACAACAACCAACAAGCCGGCAACGGCGGCGGCATTGGAATTAGCGACATGAGCGGAGGGATCTCCCCGATGGGCTTCCCTTCGTTTCAAGACCTAAACCTCTACGGAGGCGACCAGCTCGATCTTCACCAAAACGTGGATAATTTCATGCCCCACAACGACAGCCTACTATGCTTGGGAAAGTTAAAGAAGTCAAGGCCAAACTACGGGGGGTCGGGAAACAAAGGCGGGTTGGACTGGGCGGACGATCTCCGGCTGCCGTCGTGCGTCGGGCAGCAAGACGAGGACGAGTTCAAAGGCATGGTGGAGAGAGATCATTTGGAGGAAATGTATGAGGCCAAACCACAAGCGGATGAAAATGAGAACAATAATAATGTGTCCTTAAAGCTTCAGAGACCGTCCCCTAGAAGGGCACCCCTTGCGGCAGATAGGGCTAACCAGCCTCTAATTACCACACTTTCACCTTTTGGTTAA 1041 51.39 MFHAKKAPPSMNSGHERGMCVQGDSGLVLTTDPKPRLRWTIELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFIDHNSMKDGMRAPGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASSGYKPMGAIPNNNQQAGNGGGIGISDMSGGISPMGFPSFQDLNLYGGDQLDLHQNVDNFMPHNDSLLCLGKLKKSRPNYGGSGNKGGLDWADDLRLPSCVGQQDEDEFKGMVERDHLEEMYEAKPQADENENNNNVSLKLQRPSPRRAPLAADRANQPLITTLSPFG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44975886 44978548 - Sed0020908.1 Sed04g3560 712163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3560 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Sed04g3560 346 MobiDBLite consensus disorder prediction 302 346 - -
Sed04g3560 346 FunFam Myb family transcription factor 33 91 - -
Sed04g3560 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677(InterPro)
Sed04g3560 346 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Sed04g3560 346 Pfam MYB-CC type transfactor, LHEQLE motif 130 170 IPR025756 -
Sed04g3560 346 Gene3D - 33 91 - -
Sed04g3560 346 MobiDBLite consensus disorder prediction 306 320 - -
Sed04g3560 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 259 IPR046955 GO:0003700(InterPro)
Sed04g3560 346 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3560 Sed-Chr4:44975886 Sed05g3314 Sed-Chr5:42487955 8.10E-78 dispersed
Sed12g0383 Sed-Chr12:2306597 Sed04g3560 Sed-Chr4:44975886 3.30E-06 dispersed
Sed04g3560 Sed-Chr4:44975886 Sed04g3561 Sed-Chr4:44975886 9.30E-191 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed01g4135 . 184 368 G2-like Transcription Factor Family AT5G16560 53.5 5.4e-41 166.4
Sed01g4134 . 184 376 G2-like Transcription Factor Family AT5G16560 51.9 2.1e-40 164.5
Sed01g2622 . 11 166 G2-like Transcription Factor Family AT5G42630 60.7 9.1e-38 154.8
Sed13g1417 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1418 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1419 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1420 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed10g1420 . 1 353 G2-like Transcription Factor Family AT2G03500 57.1 1.6e-83 307.8
Sed03g1171 . 20 250 G2-like Transcription Factor Family AT1G25550 53.7 1.8e-51 200.7
Sed06g1866 . 15 251 G2-like Transcription Factor Family AT1G25550 52.5 3.5e-47 186.4
Sed03g1172 . 28 229 G2-like Transcription Factor Family AT1G25550 53.0 1.3e-41 167.9
Sed13g1417 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1418 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1419 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1420 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT5G05090 56.5 2.9e-75 279.6
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT5G05090 56.3 7.9e-73 271.6
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT5G05090 53.6 4.2e-66 249.2
Sed12g1174 . 1 252 G2-like Transcription Factor Family AT5G05090 53.9 9.7e-63 238.0
Sed02g1495 . 12 316 G2-like Transcription Factor Family AT4G13640 57.5 3.8e-60 229.6
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT4G13640 51.8 4.7e-58 222.6
Sed12g0381 . 12 141 G2-like Transcription Factor Family AT4G13640 71.8 8.3e-47 185.3
Sed01g4272 . 149 402 G2-like Transcription Factor Family AT3G04450 55.3 1.9e-54 211.1
Sed01g4273 . 149 403 G2-like Transcription Factor Family AT3G04450 54.9 9.5e-54 208.8
Sed01g4275 . 149 362 G2-like Transcription Factor Family AT3G04450 52.1 5.4e-49 193.0
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed08g1979 . 1 231 G2-like Transcription Factor Family AT1G69580 52.6 1.8e-45 181.0
Sed02g0909 . 47 248 G2-like Transcription Factor Family AT1G69580 53.2 3.3e-39 160.2
Sed02g0908 . 47 254 G2-like Transcription Factor Family AT1G69580 51.2 4.7e-38 156.4
Sed04g3560 . 1 346 G2-like Transcription Factor Family AT1G79430 58.0 2.5e-90 330.1
Sed04g3561 . 1 343 G2-like Transcription Factor Family AT1G79430 57.1 3.1e-88 323.2
Sed05g3314 . 1 362 G2-like Transcription Factor Family AT1G79430 53.7 4.6e-76 282.7
Sed01g0769 . 1 341 G2-like Transcription Factor Family AT1G79430 54.5 1.1e-74 278.1
Sed12g0380 . 40 206 G2-like Transcription Factor Family AT1G79430 61.7 2.8e-41 167.2
Sed02g1495 . 26 202 G2-like Transcription Factor Family AT1G79430 55.2 2.1e-36 151.0
Sed12g0381 . 40 169 G2-like Transcription Factor Family AT1G79430 60.8 2.7e-36 150.6
Sed10g0529 . 54 294 G2-like Transcription Factor Family AT2G01060 58.8 1.6e-53 207.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT3G10760 62.7 1.3e-93 340.9
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT3G10760 60.3 9.9e-89 324.7
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT3G10760 54.4 5.8e-73 272.3
Sed14g0045 . 1 201 G2-like Transcription Factor Family AT2G40970 61.7 5.3e-63 238.8
Sed03g2144 . 1 186 G2-like Transcription Factor Family AT2G40970 62.1 2.6e-57 219.9
Sed02g0794 . 1 180 G2-like Transcription Factor Family AT2G40970 64.5 5.3e-55 212.2
Sed01g4275 . 181 373 G2-like Transcription Factor Family AT2G20400 51.4 5.4e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38353 PF00249 Myb_DNA-binding 5.20E-06 CL0123 Sed TF