Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3561 ATGTTCCATGCCAAGAAAGCGCCGCCGAGTATGAATTCGGGTCACGAGCGAGGCATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCGAAACCCCGCCTCCGATGGACCATCGAGCTTCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGAGGCCCTGATAAGGCAACCCCTAAGACAATCATGAGGGTTATGGGTGTAAAGGGTCTTACTCTCTACCACCTCAAGAGCCATCTTCAGAAATTTAGACTGGGAAAGCAGCCTCATAAGGAATTCATTGATCATAATTCTATGAAGGATGCTCCAGGTCTTGAACTTCATCGAAACACAGCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTACAAAGACACCTACAGTTACGAATCGAAGCACAAGGGAAGTACATGCAAAGCATATTAGAGAAGGCTTGCCAAACCCTCGCGGGCGAAAACATGGCGGCATCGAGTGGCTACAAGCCAATGGGAGCAATCCCAAACAACAACCAACAAGCCGGCAACGGCGGCGGCATTGGAATTAGCGACATGAGCGGAGGGATCTCCCCGATGGGCTTCCCTTCGTTTCAAGACCTAAACCTCTACGGAGGCGACCAGCTCGATCTTCACCAAAACGTGGATAATTTCATGCCCCACAACGACAGCCTACTATGCTTGGGAAAGTTAAAGAAGTCAAGGCCAAACTACGGGGGGTCGGGAAACAAAGGCGGGTTGGACTGGGCGGACGATCTCCGGCTGCCGTCGTGCGTCGGGCAGCAAGACGAGGACGAGTTCAAAGGCATGGTGGAGAGAGATCATTTGGAGGAAATGTATGAGGCCAAACCACAAGCGGATGAAAATGAGAACAATAATAATGTGTCCTTAAAGCTTCAGAGACCGTCCCCTAGAAGGGCACCCCTTGCGGCAGATAGGGCTAACCAGCCTCTAATTACCACACTTTCACCTTTTGGTTAA 1032 51.45 MFHAKKAPPSMNSGHERGMCVQGDSGLVLTTDPKPRLRWTIELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFIDHNSMKDAPGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASSGYKPMGAIPNNNQQAGNGGGIGISDMSGGISPMGFPSFQDLNLYGGDQLDLHQNVDNFMPHNDSLLCLGKLKKSRPNYGGSGNKGGLDWADDLRLPSCVGQQDEDEFKGMVERDHLEEMYEAKPQADENENNNNVSLKLQRPSPRRAPLAADRANQPLITTLSPFG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44975886 44978548 - Sed0020908.2 Sed04g3561 712164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3561 343 MobiDBLite consensus disorder prediction 303 317 - -
Sed04g3561 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Sed04g3561 343 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Sed04g3561 343 Gene3D - 33 91 - -
Sed04g3561 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677(InterPro)
Sed04g3561 343 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Sed04g3561 343 MobiDBLite consensus disorder prediction 299 343 - -
Sed04g3561 343 FunFam Myb family transcription factor 33 91 - -
Sed04g3561 343 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
Sed04g3561 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 256 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3561 Sed-Chr4:44975886 Sed05g3314 Sed-Chr5:42487955 2.20E-75 dispersed
Sed04g3560 Sed-Chr4:44975886 Sed04g3561 Sed-Chr4:44975886 9.30E-191 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38354 PF00249 Myb_DNA-binding 5.10E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3561 - - - 0.0