Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3582 ATGAAATATTTCACTGATGCAATCGCCCTAACTAGATTAGTAATATTCGTGGCGACATTTACCGCCATCGTGGCCGCCACGTCACCAATTCCGGCAAACAAAGCAGCATTAAACGCGTGGTTTAAGAAGAACGTGAAGCCGCTGGGCGGCCGGGAGGCGGAGCTGGACCCGGAGCTGGCGGCGGCGGAGAAAGCCGCCGCCGTCGTGAGAGTGAAAAAGGACGGAAGTGGAGATTTCAAGACGGTGGCGGAAGCCATTGCCAGCGTTCCGGCCGGCAACAAGAAGCGCGTGGTGATTTGGATCGGCGGTGGGGTTTATAAAGAGAAGCTTAAGATCGAAAGAAATCAACCGTTTGTTACTCTTTATGGATCCCCCAATGATAAGCCCACTTTGACGTTTAATGGCAATGCTGCTAAATACGGCACCGTTTATAGCGCCACTTTGATCGTTGAGGCTGATTATTTTGTTGCTGCCAATCTCATCATTGAGAATTCATCACCAAGGCCCGATGGGAAAATGAAAGGAGGACAGGCCTTAGCCGCGAGAATAAGGGGAAATAAATCGGCAATTTACAATTGCCGATTCATCGGCTTTCAAGATACCCTTTGTGACGACGACGGCTTACATCTCTACAAGGATTGCTACATTCAAGGAACTGTCGATTTCATTTTCGGGAGAGGAACATCCCTTTATTTGAACTCCAAGTTGGTTGTGGTTGGAAAAGGAGGACTTGGAGTGATCGCAGCACATTCAAGAGAATCGAAATCGGACCCGAGCGCGTACGTATTTGCGCATTGCAGCATTATAGGCACGGGTGGCAAAAACACTTATTTGGGAAGAGCTTGGAAGCCTTATTCTAGAACTATTTTTGCCTACACGACCATGGCCGATATCATTCATCCCGCAGGCTGGCACGACATGAATCACGACGGTTACGACGCCACGGTTTCGTACGGAGAATACAAGTGTTCGGGGCCAGGATCAAAGTCGAACGAGCGTGTAAAATTCGGCAAGCAGTTTACTGATGCTGAAATGAAGCCATTCTTGAGTCTTGATTATATACAAAGTGAGAAGTGGTTGCTTCCTCCTCCAAATCCTAAAGCATAG 1107 48.33 MKYFTDAIALTRLVIFVATFTAIVAATSPIPANKAALNAWFKKNVKPLGGREAELDPELAAAEKAAAVVRVKKDGSGDFKTVAEAIASVPAGNKKRVVIWIGGGVYKEKLKIERNQPFVTLYGSPNDKPTLTFNGNAAKYGTVYSATLIVEADYFVAANLIIENSSPRPDGKMKGGQALAARIRGNKSAIYNCRFIGFQDTLCDDDGLHLYKDCYIQGTVDFIFGRGTSLYLNSKLVVVGKGGLGVIAAHSRESKSDPSAYVFAHCSIIGTGGKNTYLGRAWKPYSRTIFAYTTMADIIHPAGWHDMNHDGYDATVSYGEYKCSGPGSKSNERVKFGKQFTDAEMKPFLSLDYIQSEKWLLPPPNPKA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45150487 45153264 + Sed0024239.1 Sed04g3582 712185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3582 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed04g3582 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Sed04g3582 368 Gene3D - 62 363 IPR012334 -
Sed04g3582 368 FunFam Pectinesterase 64 362 - -
Sed04g3582 368 SUPERFAMILY Pectin lyase-like 65 361 IPR011050 -
Sed04g3582 368 Pfam Pectinesterase 69 355 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3582 Sed-Chr4:45150487 Sed05g1198 Sed-Chr5:18662566 1.10E-141 dispersed
Sed04g3582 Sed-Chr4:45150487 Sed01g3234 Sed-Chr1:59766179 1.20E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3582 K01051 - csv:101205095 523.472