Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3626 ATGGTATTTGATGGTATAGTGTTTTTATTTTCAGGTCACCAGGCACAAAATCCCTTGCTATTACTTGAGCAATATAGTGATGATGAAGTTGATGAGGACTTGAATAAAAATTCAGATAATGATGGACAAGATGCTTCGTTGTCTGACCACAATGATGAGGTTGCTGCGGTTCCTGCTGTTCCTGCTGACGGATGTGAGAAAATGGATGCAAATGTCAGTGAAGACCTGATTGCTCACAAGGCTGTTCAAGAGGAATCAGAACGAGGTTCTGTTGAGTGTTCTGAGAACCTAGAGAGCAATAATGATGCAAAAACTGACACTAATAACTTGGGATATTTAAACAAGGAAACTGATTTGGTTCAAACATCAGTACCTGCCACATCTCATGTACAAGTCCCTGGGGATGTCATTTCAGGATGGAGGATTGTTATGCATGAAGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGAGAAACTTCATGGGAAGTACCTGATGTTGTTTTGGCTCAGGCTCAGCCTACTCAATCGACCACTGATGTTAAAACTTCTCCTACTCAATTTCCAGAGAACGTTACAGTTTTTAAACAAGAATCTGGCTTAACTAATGGTGGGAAGTTAGATGCTTTTTCAGCTGAAAGCACAGTATGTGCAAGTCAGGGTTCTGATGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAATGATGTGAATATAACAAAAGCTGGTTCTGAGATCTATGTTGATTACACGCTGACTAATGAAGAACTGAAATCTAGGCTGGAACTTCCTTCACATCTTCTGAACTGGAGTGCGAGCTTGTTAGAGAGATTGAAATCATTTCAAAGATCTGGAGGTAATGAATGGACATCGAAGTATATATTGGAAACTCAGATTAGACATTCAGACTTGAAGTCATTGATGCCCTATAGAACATCTTTACTGCCATTCTGGGAACACTCAGCAAGGAAGCTTAAGCAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGCACAATTGGATGAAGCCAAGGCTACTGATGGTCCAAACGTTGTAAGAGAGGAGAAATTTCAGGAGACTTCAAATATTGATTCTGAAGTTAATAGAGTGGCTAATAGCGATTCTGCTTTGGAGCATTCTCATTTGCCTACTGATTCTGCTTCTCTGACACTCCAAGGAGATCTGAGCCAAGTTACTGTCATTGCAAATGGAGAAAATATTTCATCGTCTGTGATTGAGCATGAAAGTGAAGTTGCAAGGGATGAAATGGCTTCCAAGAGTGTACATTCTGTGGAAGATGTTGACATGGACGTGGATATGGAAGTTGAAGATGCGAGCTCTGCAGGTAACTTGATGGTGGTTGGTACATCGGATATGTCTGTTGCTAAGTCGTTTCCTTCCTTGGAACAACCACTTCACCCAGATCCACAAGCCCAGCCAAATCTTTCTTCTGGATATGCATTCATGGTACCAGAGGATAGCACTGTTGTGCCGCCTCCACCCCCACCAGATGATGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCAGATGAGCCAGCTGAGCCATTTTATCCTATGCCTCCATCTTATACCCAACTTGCGCAACCTCTTTGTTACACCGAACCATATCAAGTGCCTTATCCTGATTCTAGTATTCACTATTATGCACACCCTGTCTCTGAAGTCGTCCCTAGTGCAAACTTCTATGGGCATCCCGAAGCATGTAACGTTGTTTTGGCTCAAACACCATATTATTATGAAGCAGTTCCCAATTCACATACTGATTCTGCTCCTATAGTTGTAAATGGTGTTGTGCCTGAAGGCTATGGTATTCTTCAAGATGCAACAACCACTCTTCCCGTTTTTAGTACTGCAGAGTCTTCTCAGTTGCATGTTGATTCCTCATCTGTGAGACTTGATCCTTCTTCCTCTTTTCAATACGTATCTTCTGACTTAGCAAATAAGAATACCGCATCTTCCACCGATGAAATTGACAAGGGACGAGGAGAGACCAACACAGCCTCCTTCCGAGCATCTACTTCGGGCTCCCCAACTATTGATGTTCTGCCTACAAGTAATGCTGTTACTGATTCTTCTCCTGTTTCTAACACATCTGCAGTTTCCAAGGTTCAACCAAAAGCTGTGCGCAGTAAAAAGCGAACGGTTACAGTCGCACCCTCCTTGAGATCGAATAAGAAAGTTTCAAGCTTGTTGGACAAGTGGAAAGCAGCGAAGGAAGAACTTGAAGATGAGGAAGAACCAGAGAATACTTATGAGATTCTAGAGAAGAAACGAGAAAGGGAAATAAAGGAATGGCATGCACATCAGATTGCCACTGGGGATGCAAAAGAAAACGCTAACTTCCAGCCTCTTGGGGGTGATTGGCGCGAGCGGATAAAGCGAAGGAGAGCTCAATCATCATCAAGTGAAGTTACTCAATCCCCTGCTGAAGCATCCACAGGTGGAAATCAGCAGCAGAAGCAGTCTGACCTGGCAGAAATCTCAAAAGATCTCCCCTCAGGGTGGCAGGCATACTGGGATGAATCATCAAAGCAGGTGTATTATGGTAATGTTAACACCTCGGAAACGTCGTGGACAAAACCGAGCAAGTGA 2649 42.85 MVFDGIVFLFSGHQAQNPLLLLEQYSDDEVDEDLNKNSDNDGQDASLSDHNDEVAAVPAVPADGCEKMDANVSEDLIAHKAVQEESERGSVECSENLESNNDAKTDTNNLGYLNKETDLVQTSVPATSHVQVPGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVLAQAQPTQSTTDVKTSPTQFPENVTVFKQESGLTNGGKLDAFSAESTVCASQGSDVDQSYAAFSTCSNDVNITKAGSEIYVDYTLTNEELKSRLELPSHLLNWSASLLERLKSFQRSGGNEWTSKYILETQIRHSDLKSLMPYRTSLLPFWEHSARKLKQIEDDINKEIYQTAAQLDEAKATDGPNVVREEKFQETSNIDSEVNRVANSDSALEHSHLPTDSASLTLQGDLSQVTVIANGENISSSVIEHESEVARDEMASKSVHSVEDVDMDVDMEVEDASSAGNLMVVGTSDMSVAKSFPSLEQPLHPDPQAQPNLSSGYAFMVPEDSTVVPPPPPPDDEWIPPPPPDNEDVPPPPPDEPAEPFYPMPPSYTQLAQPLCYTEPYQVPYPDSSIHYYAHPVSEVVPSANFYGHPEACNVVLAQTPYYYEAVPNSHTDSAPIVVNGVVPEGYGILQDATTTLPVFSTAESSQLHVDSSSVRLDPSSSFQYVSSDLANKNTASSTDEIDKGRGETNTASFRASTSGSPTIDVLPTSNAVTDSSPVSNTSAVSKVQPKAVRSKKRTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENTYEILEKKREREIKEWHAHQIATGDAKENANFQPLGGDWRERIKRRRAQSSSSEVTQSPAEASTGGNQQQKQSDLAEISKDLPSGWQAYWDESSKQVYYGNVNTSETSWTKPSK 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45455254 45462396 + Sed0019267.3 Sed04g3626 712229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3626 882 ProSiteProfiles WW/rsp5/WWP domain profile. 134 168 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 CDD WW 138 167 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 SUPERFAMILY WW domain 127 166 IPR036020 GO:0005515(InterPro)
Sed04g3626 882 MobiDBLite consensus disorder prediction 668 697 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 471 490 - -
Sed04g3626 882 CDD WW 851 880 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 SMART ww_5 849 882 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 SMART ww_5 135 168 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 MobiDBLite consensus disorder prediction 499 535 - -
Sed04g3626 882 Coils Coil 743 763 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 496 535 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 93 109 - -
Sed04g3626 882 SUPERFAMILY WW domain 847 880 IPR036020 GO:0005515(InterPro)
Sed04g3626 882 ProSitePatterns WW/rsp5/WWP domain signature. 140 166 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 Gene3D - 133 177 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 818 845 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 82 109 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 31 51 - -
Sed04g3626 882 ProSiteProfiles WW/rsp5/WWP domain profile. 848 882 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 PANTHER OS06G0298400 PROTEIN 10 882 - -
Sed04g3626 882 MobiDBLite consensus disorder prediction 790 847 - -
Sed04g3626 882 Pfam WW domain 138 166 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 Pfam WW domain 850 880 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 ProSitePatterns WW/rsp5/WWP domain signature. 854 880 IPR001202 GO:0005515(InterPro)
Sed04g3626 882 Gene3D - 844 882 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3626 K24774 - - csv:101219916 1213.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3624 Sed-Chr4:45455254 Sed04g3626 Sed-Chr4:45455254 0.00E+00 dispersed
Sed04g3625 Sed-Chr4:45455254 Sed04g3626 Sed-Chr4:45455254 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42