Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3629 ATGATCACTTCTGGTTATTTCGCTACGGGGCCGTTGTGTTACTGCGGCGGTACTGCTTCCTTTATCTCAAATTCGTTGGTGGAAGAAGATGGTATAGGTGCGGATGTTAGAGATGTCAATTCTGTTGCTCTCCCTGCTGCATCTTTCTGGGTTAGGACAGCAATGAGAGTGTCTAGAGCCAGGTGGTTTCTTTTCTTGCGAAGGGTATTTCACTACCAAAACGGATCAAGATCGGATCTCGGGTCCGATCCTTTCAATTCCAGCTCGTGGATGGCAATGGAGCTGGTAGCGCTGGTGTTTCAGCTGGCAATCACAGCATTCTTTCTTGCCATTTCAGAGACTGAAAAGCCAGTGTGGCCAATGAGACTTTGGATAATTGGTTATGATCTTGGCTGCACTCTTAGCTTGTTGCTTCTATACGGGCGCTATTGGCATCTTTATTTAATGCGCGGAGACCGTGTCGGCCTTTCTGATACGGAGCAGCGGAGGAGCAATCAAGCATCAAGGAGCATGCGTATGATGAACAAATGTCGGTCGTCTCTTGAACTTTTCTTTGCAATATGGTTCGTGATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGTTATGCGTCTTCTTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGTTGTGTGCCATTGATTAGTAACCTCTTAGGATACAACATTAACATGGCGTCGACCGACAAAGGAGCATCGGATGATCTAATTTCCCAGCTACCATTCTGGAGATATAGGACAAGCTCAAAGCAACCTGATAGTAACAAGGGGCTACCAAAAGAAGATCCAGAATGTTGCATTTGTCTGGTCAAGTACAAAGATGAAGAAGAAGTAAGACAGTTGCCTTGTTCCCATCTGTTCCATCTCAAATGTGTAGATAAGTGGCTGGCTATCACATCTGCATGTCCTCTCTGTAAGCAACAACTTCAAAGATAG 1017 44.94 MITSGYFATGPLCYCGGTASFISNSLVEEDGIGADVRDVNSVALPAASFWVRTAMRVSRARWFLFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVALVFQLAITAFFLAISETEKPVWPMRLWIIGYDLGCTLSLLLLYGRYWHLYLMRGDRVGLSDTEQRRSNQASRSMRMMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISNLLGYNINMASTDKGASDDLISQLPFWRYRTSSKQPDSNKGLPKEDPECCICLVKYKDEEEVRQLPCSHLFHLKCVDKWLAITSACPLCKQQLQR 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45478527 45482020 - Sed0022976.1 Sed04g3629 712232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3629 338 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 50 337 - -
Sed04g3629 338 SUPERFAMILY RING/U-box 291 336 - -
Sed04g3629 338 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Sed04g3629 338 SMART ring_2 292 332 IPR001841 -
Sed04g3629 338 Pfam Ring finger domain 291 333 IPR001841 -
Sed04g3629 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 337 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3629 Sed-Chr4:45478527 Sed04g3631 Sed-Chr4:45479085 1.80E-170 dispersed
Sed04g3629 Sed-Chr4:45478527 Sed04g3630 Sed-Chr4:45478527 4.80E-200 tandem
Sed04g3629 Sed-Chr4:45478527 Sed07g2751 Sed-Chr7:42582017 1.10E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3629 - - - 0.0