Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3630 ATGATCACTTCTGGTTATTTCGCTACGGGGCCGTTGTGTTACTGCGGCGGTACTGCTTCCTTTATCTCAAATTCGTTGGTGGAAGAAGATGGTATAGGTGCGGATGTTAGAGATGTCAATTCTGTTGCTCTCCCTGCTGCATCTTTCTGGGTTAGGACAGCAATGAGAGTGTCTAGAGCCAGGTGGTTTCTTTTCTTGCGAAGGGTATTTCACTACCAAAACGGATCAAGATCGGATCTCGGGTCCGATCCTTTCAATTCCAGCTCGTGGATGGCAATGGAGCTGGTAGCGCTGGTGTTTCAGCTGGCAATCACAGCATTCTTTCTTGCCATTTCAGAGACTGAAAAGCCAGTGTGGCCAATGAGACTTTGGATAATTGGTTATGATCTTGGCTGCACTCTTAGCTTGTTGCTTCTATACGGGCGCTATTGGCATCTTTATTTAATGCGCGGAGACCGTGTCGGCCTTTCTGATACGGAGCAGCGGAGGAGCAATCAAGCATCAAGGAGCATGCGTATGATGAACAAATGTCGGTCGTCTCTTGAACTTTTCTTTGCAATATGGTTCGTGATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGTTATGCGTCTTCTTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGTTGTGTGCCATTGATTAGTAACCTCTTAGGATACAACATTAACATGGCGTCGACCGACAAAGGAGCATCGGATGATCTAATTTCCCAGCTACCATTCTGGAGATATAGGACAAGCTCAAAGCAACCTGATAGTAACAAGGGGCTACCAAAAGAAGATCCAGTAAGTAAAGCATTTATTGATCATGAATGTTGCATTTGTCTGGTCAAGTACAAAGATGAAGAAGAAGTAAGACAGTTGCCTTGTTCCCATCTGTTCCATCTCAAATGTGTAGATAAGTGGCTGGCTATCACATCTGCATGTCCTCTCTGTAAGCAACAACTTCAAAGATAG 1041 44.48 MITSGYFATGPLCYCGGTASFISNSLVEEDGIGADVRDVNSVALPAASFWVRTAMRVSRARWFLFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVALVFQLAITAFFLAISETEKPVWPMRLWIIGYDLGCTLSLLLLYGRYWHLYLMRGDRVGLSDTEQRRSNQASRSMRMMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISNLLGYNINMASTDKGASDDLISQLPFWRYRTSSKQPDSNKGLPKEDPVSKAFIDHECCICLVKYKDEEEVRQLPCSHLFHLKCVDKWLAITSACPLCKQQLQR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45478527 45482020 - Sed0022976.2 Sed04g3630 712233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3630 346 CDD RING-H2_RNF6-like 299 341 - -
Sed04g3630 346 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Sed04g3630 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 345 IPR013083 -
Sed04g3630 346 SUPERFAMILY RING/U-box 299 344 - -
Sed04g3630 346 SMART ring_2 300 340 IPR001841 -
Sed04g3630 346 Pfam Ring finger domain 299 341 IPR001841 -
Sed04g3630 346 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 50 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3630 Sed-Chr4:45478527 Sed04g3632 Sed-Chr4:45484567 5.20E-133 dispersed
Sed04g3629 Sed-Chr4:45478527 Sed04g3630 Sed-Chr4:45478527 4.80E-200 tandem
Sed04g3630 Sed-Chr4:45478527 Sed04g3631 Sed-Chr4:45479085 3.20E-175 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3630 - - - 0.0