Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3632 ATGATTCATTCTGGTTTCTTCATTGTGGGTCCTAATTCTGATGTTACTACGTCTTTCATATCAACACCCGTGTTTAGAGAAGATGGTATCAGAAACGAATTGTCTGATTTCCTTCCCCCTTCTTTTTGGGTTAGAACGGCTATGAAACTCTCTAGAGCTAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTACCAGAATGGATCGAGAACTGATCTTGGGCCGAATCCTTTCGTTTCGGGTTCGTGGATGGCGATTGAACTTGTGGCTCTATTGTTTCAGCTAATCATCTCAGTGTTGATCCTTGCCATTTCAGAAACTGAGAGGCCAGTTTGGCCTTTGAGATTGTGGGTTGGTGGTTATGACCTTGGTTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCATCGATATTATTATCTAATGCCGGGAGATGGTAGTAGTCTTTTGGATATCGAACAACAGAGGAGCAACAATGAGCCATCAAGGTACTCACATTTGATGAACAGATGTCGGACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTCTGGGTCTTCGATTCTCGCCTTGCCTCGTTTCAAAGAGCTCCAAAGCTACATCTACTATGCAGCTTCCTTCTAGCTTGGAATGCCATATGCTACTCTTTCCCATTCTTTCTGTTTCTGCTGTTATGCTGCTGTGTTCCATTGATCAGTAGTTTTATAGGATATAACATTAACATGGGATCAACTGAAAAAGGAGCGTTGGACGAACAAATTTCTCAGCTACCTCATTGGAAATACAAAGCAGTCGACGCTAACATCAACCTCAAAAGTCAACCGAATCATAGTAATACAGGACATCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGATAAGGAAGAAGTGAGACAATTGCCTTGTTCCCATGTGTTTCATCTCAAATGTGTAGATAAGTGGCTTGCTATTGCATCTTCATGCCCTCTCTGTAAGCAACAACTTCAAAGGTAG 1020 41.86 MIHSGFFIVGPNSDVTTSFISTPVFREDGIRNELSDFLPPSFWVRTAMKLSRARWFIFLRRVFHYQNGSRTDLGPNPFVSGSWMAIELVALLFQLIISVLILAISETERPVWPLRLWVGGYDLGCVLSLLLLYGRHRYYYLMPGDGSSLLDIEQQRSNNEPSRYSHLMNRCRTSLDLFFAIWFVMGNLWVFDSRLASFQRAPKLHLLCSFLLAWNAICYSFPFFLFLLLCCCVPLISSFIGYNINMGSTEKGALDEQISQLPHWKYKAVDANINLKSQPNHSNTGHPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAIASSCPLCKQQLQR 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45484567 45487074 - Sed0025760.1 Sed04g3632 712235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3632 339 Pfam Ring finger domain 292 334 IPR001841 -
Sed04g3632 339 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 40 338 - -
Sed04g3632 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 338 IPR013083 -
Sed04g3632 339 SMART ring_2 293 333 IPR001841 -
Sed04g3632 339 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Sed04g3632 339 SUPERFAMILY RING/U-box 292 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3630 Sed-Chr4:45478527 Sed04g3632 Sed-Chr4:45484567 5.20E-133 dispersed
Sed04g3632 Sed-Chr4:45484567 Sed07g2751 Sed-Chr7:42582017 1.80E-159 dispersed
Sed04g3631 Sed-Chr4:45479085 Sed04g3632 Sed-Chr4:45484567 7.20E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3632 - - - 0.0