Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3639 ATGGCTGCCGCCAAGTTCAACAAGAAGAAGGCCGCGAAGCGGGACGGCCCTCCATCGAAAACGAAGAAGAAAGACGAGCTTTTCACGCCTAAACGTTCCAAGGCGGAGGTGGAGGATGATTCCGACCTTTCCGATGGTTTTGACGAGGATGAAGTAGAGAATGGAATGGTTGATAGTGATGAAGAAGGGTCTGGGTCTGGGTCTGGGTCTGGTTCTGGTTCTGATGTTTCTTCTGATGGGGATGATCCGTTGGCTGATGATTTCCTCCAAGGAAGCGACGAAGGCTCGGTCTCTGGTTCGGGTTCGGATTCTGATGAATCCGACATTGAAGGCAAGTCTAGAGCTATTGACGAAGAAAGAGCGAGGGAAGAAAAAGACGCAGCGGATGAAATGCAGCTTAATATTAAAGAGGAATCTGATGAGTTCAGATTACCAACCAAGGAGGAACTGGAAGAAGAGGCGCTTGGACCTCCTGACCTTTCAAATTTACAAAGGAGGATAAGAGAAATTGTTCGAGTGCTTTCAAATTTAAAGGCTTTGAGGCAAGAAGGGGCAACCCGAAAGGATTATGTTGAACAACTTAAGAAAGATATTGGTTCATACTATGGCTATAACGAATTTTTTATTGGGGTTCTAGTTGAGCTGTTTCCTGTTGTCGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCAATATGTTTGCGGACTAACACCTTAAAGACTAGAAGGCGGGATCTAGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTGGTTGTGTATGATTCTCAAGTGCCAATTGGAGCAACTCCTGAATATTTGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTTATGGCCCTTGCTCCTCAGGAAAAAGAACGAATCATTGACATGGCGGCTGCTCCTGGTGGTAAAACGACTTACATAGCGGCACTCATGAAAAATAGTGGAATAATATTTGCTAATGAGATGAAAGTACCAAGACTGAAGTCACTTACTGCAAATTTACAACGGATGGGAGTGACAAATACCATTGTCTGTAACTACGACGGAAAGGAGCTCCCGAAAGTTTTGGGCATGAATACAGCTGATAGAGTTCTATTAGATGCTCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCCTAGAAGAAATCCAGAAATGTGCTGAGTTGCAGAAGAAACTTATACTTGCTGCAATTGACATGGTTGATTCAAATTCTAAATCTGGGGGATATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAGTTGTTGACTATGCACTAAAGAAGAGGCATGTGAAACTTGTGCCATGTGGCCTTGATTTTGGACGTCCTGGGTTTATACGGTTCAGGGAGAAACGCTTTCACCCATCTTTAGAGAAGACAAGACGTTTCTACCCACATGTTCACAACATGGACGGGTTTTTTGTGGCCAAGTTGAAGAAAATGAGCAACAAGATCCCAACTTCTGAATCTTCAGAAGCATTGGAGGCAGAGGAAGAAGAATCATTGGAAGAAGAGGAAGAAGATAATGAGCCAAAGAAGAAGAGTGCAAATGCAAAGAAGGATGGCGAACGCCTTCAACCGCAAGCGATTGAACCTCGTAAAAAGAGGGAGAAGAGAAAATTTCCTTCAAGAGAGGAAATCTCAAAAGCTAGGGAAGAGAAACGTCAAAAATTGAGGGAAACGAAAGGTGGGAGCAAGAAAGAGTAA 1803 43.43 MAAAKFNKKKAAKRDGPPSKTKKKDELFTPKRSKAEVEDDSDLSDGFDEDEVENGMVDSDEEGSGSGSGSGSGSDVSSDGDDPLADDFLQGSDEGSVSGSGSDSDESDIEGKSRAIDEERAREEKDAADEMQLNIKEESDEFRLPTKEELEEEALGPPDLSNLQRRIREIVRVLSNLKALRQEGATRKDYVEQLKKDIGSYYGYNEFFIGVLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYLAGFYMLQGASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLQRMGVTNTIVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKKLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAVVDYALKKRHVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTSESSEALEAEEEESLEEEEEDNEPKKKSANAKKDGERLQPQAIEPRKKREKRKFPSREEISKAREEKRQKLRETKGGSKKE 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45518429 45524975 + Sed0016663.2 Sed04g3639 712242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3639 600 FunFam Ribosomal RNA methyltransferase Nop2 191 297 - -
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 243 256 IPR023273 GO:0008168(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 220 232 IPR023273 GO:0008168(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 187 207 IPR023273 GO:0008168(InterPro)
Sed04g3639 600 MobiDBLite consensus disorder prediction 1 154 - -
Sed04g3639 600 MobiDBLite consensus disorder prediction 105 154 - -
Sed04g3639 600 Pfam 16S rRNA methyltransferase RsmB/F 301 511 IPR049560 -
Sed04g3639 600 MobiDBLite consensus disorder prediction 539 600 - -
Sed04g3639 600 Gene3D Sun protein; domain 3 190 297 - -
Sed04g3639 600 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 198 512 IPR029063 -
Sed04g3639 600 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 224 513 IPR001678 GO:0008168(InterPro)
Sed04g3639 600 MobiDBLite consensus disorder prediction 8 40 - -
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase signature 495 512 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase signature 381 393 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase signature 284 298 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase signature 435 451 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sed04g3639 600 PRINTS RNA (C5-cytosine) methyltransferase signature 313 323 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Sed04g3639 600 Coils Coil 520 540 - -
Sed04g3639 600 MobiDBLite consensus disorder prediction 61 77 - -
Sed04g3639 600 MobiDBLite consensus disorder prediction 524 538 - -
Sed04g3639 600 NCBIfam NOL1/NOP2/sun family putative RNA methylase 236 512 IPR011023 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0008757(InterPro)
Sed04g3639 600 Coils Coil 121 141 - -
Sed04g3639 600 Gene3D Vaccinia Virus protein VP39 300 594 IPR029063 -
Sed04g3639 600 MobiDBLite consensus disorder prediction 517 600 - -
Sed04g3639 600 Coils Coil 160 180 - -
Sed04g3639 600 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 93 516 IPR023267 GO:0000470(PANTHER)|GO:0001510(InterPro)|GO:0001510(PANTHER)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0009383(PANTHER)|GO:0070475(PANTHER)
Sed04g3639 600 MobiDBLite consensus disorder prediction 41 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3639 K14835 - - csv:101211286 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3639 Sed-Chr4:45518429 Sed06g1074 Sed-Chr6:19452215 5.30E-16 dispersed
Sed04g3638 Sed-Chr4:45518429 Sed04g3639 Sed-Chr4:45518429 6.80E-298 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42