Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3670 ATGAGGTGGATTTGTAATGGGGTTTTTGTTTTCTTTCTTGTTTTTGTTGTCTTTGTTGTCCCCGGAGAGAGTTCCGGCGGCGGCGGTGGCGGCGGCAGAGGTGGTGTTGCTGTGGCGGCGAGATATGCAATAAGTTGGGATGATTTGCATGTCGGCGGTGATCACCGGCGGCCGGGGCTGAACTCCGGCAAGAATGGGAGTAGAATAATAGTGGTGGATAAGAATGGTTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATTTGGTTCCTACTTATAATAAACAGAGAATTAAGATTTATATTCTTCCAGGAATTTACAGAGAGAAGGTGTACATACCCATCACCAAACCATATATTTCATTCATTGGAAGTAATCATCGAGTTCATCGAGTTCAAGACACTGTTATTACATGGAACGACAAAGCGTCCGACAAGAATATCCATGGAGAGGAACTCGGGACGTATAGAACAGCGACCGTTGCAATCGAGTCCGACTATTTTTGTGCGATGGGAATCACATTCGAGAATACAGTTGTTGCACAGCCTGGAGATAGGGGAAGACAAGCTGTGGCTCTAAGAATTTCAGGAGATAAGGCCATGTTTTATAGAGCCAAATTCTTAGGAGCTCAAGATACACTTTTGGATGACTTGGGCACACACTACTTCTATCAATGCCACATTGAAGGAAGTGTCGATTTCATATTCGGTTCCGCTAGATCACTCTACGAGCAATGTGTAATAACCTCCAGAGCAGAGACCTATGGAGCAATAGCAGCACATCATCGGGCCTCAGCGGACGAAAACACCGGCTTCTCTTTCCTGCGCTGCGTAATCAAAGGAGGTGGCAAAATATTCCTTGGAAGAGCATGGGGGAAGTATTCAAGAACAATATATTCTTACTGTTACATTCAAGATATAATAACTCCATTGGGGTGGAGTGACTGGAGCGACCCATCAAGACAAGGGACAGTAGTTTTTGGGCAACATAGTTGCAGGGGCAGAGGAGCAAACACAAAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATAAGGAAGTGAGACCTTTTGTAGACAAAAAATTCATCAACGGAGAACAATGGCTCAACTTGTGA 1116 45.88 MRWICNGVFVFFLVFVVFVVPGESSGGGGGGGRGGVAVAARYAISWDDLHVGGDHRRPGLNSGKNGSRIIVVDKNGSGDSTTVQGAVDLVPTYNKQRIKIYILPGIYREKVYIPITKPYISFIGSNHRVHRVQDTVITWNDKASDKNIHGEELGTYRTATVAIESDYFCAMGITFENTVVAQPGDRGRQAVALRISGDKAMFYRAKFLGAQDTLLDDLGTHYFYQCHIEGSVDFIFGSARSLYEQCVITSRAETYGAIAAHHRASADENTGFSFLRCVIKGGGKIFLGRAWGKYSRTIYSYCYIQDIITPLGWSDWSDPSRQGTVVFGQHSCRGRGANTKGWVPWAKTFSYKEVRPFVDKKFINGEQWLNL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45704661 45708671 - Sed0008909.1 Sed04g3670 712273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3670 371 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 370 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed04g3670 371 SUPERFAMILY Pectin lyase-like 68 370 IPR011050 -
Sed04g3670 371 Gene3D - 64 371 IPR012334 -
Sed04g3670 371 FunFam Pectinesterase 65 371 - -
Sed04g3670 371 Pfam Pectinesterase 70 365 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g3670 371 ProSitePatterns Pectinesterase signature 2. 228 237 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3670 Sed-Chr4:45704661 Sed08g0819 Sed-Chr8:6638376 2.60E-74 dispersed
Sed04g3670 Sed-Chr4:45704661 Sed12g1810 Sed-Chr12:29193164 9.60E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3670 K01051 - csv:101209316 539.65