Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3683 ATGGCGCTGAAAGAGAGTCCATGCGCTGTTACAGAGCCCCGTCTTGTGGCTAGAAAGTTTCTGGCTAGGCCTCAGCACGAAGGGATGGCCGCCATTGTTAGAAGAAGCATTGGAAGGTTTGAGTTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCTGATCATCCACATAGAGGATTTGAGACAGTGACCTATATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATTGGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCTGCCCAAGGAACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAATAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGAAATCCCAGAAGCTACCAAAGATGGAGTTAGAGTGAAAGTCATAGCTGGTGAGGCATTGGAAGCAAAATCACCAATCTATACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAACAGCCAATCCCGTCATCCTGGAATGCATTCGTTTACATTCTAGAAGGCGAAGGCGTCTTCGGAAGTTCGAAGGCGACGCCGACGACAGCGCATAACCTTCTTCTGCTCGGGTTCGGGGACTGTTTAGAGGTATGGAATAAGTCAGCCAAGCCTTTAAGGTTCATTTTGGTAGGAGGTGAACCATTGGGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGTTGATTTTGATAACTATACTAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCACTTGGATTCTAA 906 45.25 MALKESPCAVTEPRLVARKFLARPQHEGMAAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKEIPEATKDGVRVKVIAGEALEAKSPIYTRTPTMYLDFTLKPKAHLQQPIPSSWNAFVYILEGEGVFGSSKATPTTAHNLLLLGFGDCLEVWNKSAKPLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIVDFDNYTNGFEKARHWRSEAAISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45797514 45802138 - Sed0005017.1 Sed04g3683 712286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3683 301 Pfam Pirin 33 126 IPR003829 -
Sed04g3683 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Sed04g3683 301 FunFam pirin 27 167 - -
Sed04g3683 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Sed04g3683 301 CDD cupin_pirin_C 176 252 - -
Sed04g3683 301 PIRSF Pirin 12 292 IPR012093 -
Sed04g3683 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Sed04g3683 301 PANTHER PIRIN-RELATED 10 294 IPR012093 -
Sed04g3683 301 CDD cupin_pirin_N 31 128 - -
Sed04g3683 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3683 Sed-Chr4:45797514 Sed07g2719 Sed-Chr7:42384795 1.20E-122 dispersed
Sed04g3683 Sed-Chr4:45797514 Sed07g2718 Sed-Chr7:42384795 5.50E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3683 K06911 - csv:101216351 558.91