Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3684 ATGAGGTCCTGGAAGACTTTTCCGGCAGTGTGTTCTTCTTCTCGCATTCCCCTTCTTCTGTTTCCTCTGCTTCTTCACTCGTTCGTGGCGCTGGTCTCTGCTCAGGGATCTAATAGTACCGGTCCATGGCAGACTCTGAGTGGGGAGGCTCCATTTGTTGTGGCTCGTGGTGGATTTTCAGGGCTGTTTCCTGATTCGAGCCAAGTTGCGTACAATTTCGCACTTATGGTTAGTGTTCCTGATGCGATCTTATGGTGCGATGTGCAATTAACTAAAGACGGAGTTGGAATTTGTCTCCCGGATCTGAAGCTTGACAATGCTACAGATGCTGCGAATATTCTGGGGGAAAACCGCAGCAGTACATATCTTGTTAATGGAGTCCGTACTACGGCATTATTTACGGTGGATTTCAATTCCAACGAACTAGTAAACGTTTCTCTTACTCAAGGTATCTATTCTCGATCGAACAAGTTTGATGGCAATGATTTTGTTATTCTCACTCCTGAAGATGTAGTTAAGCAGTTAAACCCCCCAGGACTTTGGCTGAATATTCAGCATGATGCATTCTTCACACAGCAAAAATTGAGCATGAGGAGCTTTGTACTTTCTGTAACCAGAAACATCATTGTGAACTATATATCATCACCAGAGGTGGGATTTCTAAGAAGTATAGCTTCAAGAGTTAATCCTCGCACAAAGTTGATCCTTCGGGTCTTAGGACCAACTGATATTGAGCTTACCACCAATCAGACATATGATTCTCTCTTACGCAATCTCACATTTATCAAAACATTTGCTTCTGGAATTCTTGTTCCTAAGACTTATATATGGCCCGTTGATAGAGATGGTTACTTACAACCTGAAACCTCTCTTGTCTCCAATGCTCATAAAGCACAGCTGGAAGTTTTTGCATCAGAATTCTATAGTGACCTCCCACTAGCCTACAACTACAGTTATGATCCCATTACTGAATACCTGTCTTACATTGACAATGGTAAATTTTCAGTTGATGGCGTGCTCTCTGATTTCCCTATTAGTCCATCGGCAGCTATTGATTGTTTTGCTCGTTTGGATGCTAAGGCAAAAGGTCAAGCCAAGCCTTTGGTCATTTCCAAATTTGGAGCCAGTGGAGACTTTCCTGCTTGCACAGACTTGGCGTATTCCAATGCTATTTTAGATGGTGCAGAAGTGCTCGACTGTCCTGTTCAAATTTCAAAAGATGGAATAGCATTTTGCATGAGCTCAATCAATCTTATAGATAGCACTACAATATCTCAAACATCGTTTACCAGTCGTTCAAAAAAAGTTCCCGAAATTAGTCCTAACGATGGAATCTTTGCTTTTGATTTAACATGGGAAGAGATTAAACGCCTGACCCCGTCGATATTGAACCCTTTTTCGAAGTTCACATTGTTTCGAAACCCTAGGTTCCGAAACAGTGGGAAATTCCTAACACTACCGGATTTCTTGGCCTTGGCAAAGAATGCAAGCTCTCTTTCTGGTATCTTGATCCATATTGAGAATGCAGCATATCTTGCTTCAGCTCAGGGTTTAAGCGTAACTGATGCGGTCTCTGATTCCTTGACCAAAGCTGGTTATGATAATCAAATAGCCCTGAAAGTATTGATTCAGTCTCCAGAGAGCTCTGTTCTAAAAAAATTTAAAGAGGAAAAGAAAAATTACGAGCTTGTTTATGAAGTTAAGGATCCAATTAGTGATGTGGTAAATGGAACTGTCTTGGACATCAAGAGTTTTTCCGATTCCGTGACTATCGACAAGGAATCTGTCTTTCCTTCGAATCAGCTATTTCTGACTGGATCTACAAATGTTGTGACGAAGCTGAAATCTGCTAATCTCTCTGTATATGTGCAATTCTTCAACAATGAATTTGTCTCTCAAGCCTGGGATTTCTTCTCAGACCCAACAGTAGAGATCAACTCATTTTTCAAGGGCGCCAACATTGATGGAGTCATCACCGACTTTCCGAAGACATCTGCTAGATACAAAAAGAACCGATGCTTAACAAAAGATCCACCTAATTACATGAGCCCTGTCCAGGCTGGGAGCTTGATGCAACTTATTACTCCAGAATACATGCCCGGAAAGAAATCTCCGAGCCCGGTTCTGGATAACAAAACCGTAGATGAGTCACCATTGCCTCCAGTCTCGAAAAAAGCCCCAGAACCTACTCCAGATGGTGGCTCTTCGGGAGCCGGAGCACCTCCAACTCCTTCACCCAATGGACAACCTAAGCTTGGAGCTGGCCCAGGTTTCTTGCTCTTGAACCTTGCCATACTTTGCATTGCTCTTCTTCCATTCTGA 2322 42.59 MRSWKTFPAVCSSSRIPLLLFPLLLHSFVALVSAQGSNSTGPWQTLSGEAPFVVARGGFSGLFPDSSQVAYNFALMVSVPDAILWCDVQLTKDGVGICLPDLKLDNATDAANILGENRSSTYLVNGVRTTALFTVDFNSNELVNVSLTQGIYSRSNKFDGNDFVILTPEDVVKQLNPPGLWLNIQHDAFFTQQKLSMRSFVLSVTRNIIVNYISSPEVGFLRSIASRVNPRTKLILRVLGPTDIELTTNQTYDSLLRNLTFIKTFASGILVPKTYIWPVDRDGYLQPETSLVSNAHKAQLEVFASEFYSDLPLAYNYSYDPITEYLSYIDNGKFSVDGVLSDFPISPSAAIDCFARLDAKAKGQAKPLVISKFGASGDFPACTDLAYSNAILDGAEVLDCPVQISKDGIAFCMSSINLIDSTTISQTSFTSRSKKVPEISPNDGIFAFDLTWEEIKRLTPSILNPFSKFTLFRNPRFRNSGKFLTLPDFLALAKNASSLSGILIHIENAAYLASAQGLSVTDAVSDSLTKAGYDNQIALKVLIQSPESSVLKKFKEEKKNYELVYEVKDPISDVVNGTVLDIKSFSDSVTIDKESVFPSNQLFLTGSTNVVTKLKSANLSVYVQFFNNEFVSQAWDFFSDPTVEINSFFKGANIDGVITDFPKTSARYKKNRCLTKDPPNYMSPVQAGSLMQLITPEYMPGKKSPSPVLDNKTVDESPLPPVSKKAPEPTPDGGSSGAGAPPTPSPNGQPKLGAGPGFLLLNLAILCIALLPF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45804623 45812601 - Sed0018507.1 Sed04g3684 712287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3684 773 MobiDBLite consensus disorder prediction 701 753 - -
Sed04g3684 773 Pfam Glycerophosphoryl diester phosphodiesterase family 374 664 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 SUPERFAMILY PLC-like phosphodiesterases 366 668 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 SUPERFAMILY PLC-like phosphodiesterases 51 345 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 23 732 - GO:0008889(PANTHER)
Sed04g3684 773 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 49 350 - -
Sed04g3684 773 CDD GDPD_SHV3_repeat_1 51 350 - -
Sed04g3684 773 ProSiteProfiles GP-PDE domain profile. 51 351 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 Gene3D Phosphatidylinositol (PI) phosphodiesterase 50 347 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 Gene3D Phosphatidylinositol (PI) phosphodiesterase 365 668 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 ProSiteProfiles GP-PDE domain profile. 367 669 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed04g3684 773 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 365 669 - -
Sed04g3684 773 CDD GDPD_SHV3_repeat_2 367 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3684 Sed-Chr4:45804623 Sed10g0903 Sed-Chr10:6959253 1.60E-153 dispersed
Sed04g3684 Sed-Chr4:45804623 Sed07g2717 Sed-Chr7:42373583 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3684 - - - 0.0