Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3686 ATGGCTGTTTCCAAGGATGGGCTTCCATGGTCTGTCAGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCTTGCAGAGGAAACACCTTTACTCTACAGCCTTGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAAGCTTAACAGCAAGACAGCCCTTCATGTTTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACTGGTCTTCTAACAGCATATATTCTAAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAACGGTTTTAATGGCTTACCTGTCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACTGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACCGATAATTCAAAAATAACCACCAGGCATGTATTTGCAATGATGTCATTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGAATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGTGTGGAGAAGTTGCTTGGTACATATAGCATAATAGTCTTCTTGATACTACTTGGTCGTGCGGCCTTTGTATTTCCCCTATCTGCTATATCTAATTACTTTAATAAGCGTGAAGATAGATCGTCAACGTCTTCTATAATCACTTTTAAACAACAGATCATAATATGGTGGGCTGGACTAATGAGAGGAGCTGTATCCATTGCTTTGGCTTTCAAACAGTTCACCTATTCTGGGGTAACACTGGATCCAACCAACGCAACAATGGTTACCATCACCACAGTTGTTGTACTCTTCACTACGGTGGTATTTGGGTTTCTAACAAAGCCTCTCATAATATGTCTGCATCCTCTCAACCAAGCAACTAACAATGCAAGCAACTCCGGACCGAAGTTCACCGAAGAGGACATAACTCTCCCTCTGTTGTCTATGGAAGAGTCGACTGCAACCAACGTCCTCCGCGCAAAGGATAGTTTGTCAATGTTAATGGAGAGGCCTGTGTACACCACACATTTCTTTTGGAGGAAGTTTGATGATACATACATGAGACCTATATTCGGAGGGCCTCGCCATAACCAACCTAGTGGTTCGGGTTGTTAG 1194 42.21 MAVSKDGLPWSVSTGLYCYRCYFFIHGHSMHLAEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITKLNSKTALHVFGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAITVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDNSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSVEKLLGTYSIIVFLILLGRAAFVFPLSAISNYFNKREDRSSTSSIITFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTLDPTNATMVTITTVVVLFTTVVFGFLTKPLIICLHPLNQATNNASNSGPKFTEEDITLPLLSMEESTATNVLRAKDSLSMLMERPVYTTHFFWRKFDDTYMRPIFGGPRHNQPSGSGC 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45823546 45832965 + Sed0001968.2 Sed04g3686 712289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3686 397 Gene3D - 34 316 IPR038770 -
Sed04g3686 397 PANTHER SODIUM/HYDROGEN EXCHANGER 35 389 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Sed04g3686 397 Pfam Sodium/hydrogen exchanger family 38 310 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3686 Sed-Chr4:45823546 Sed04g3688 Sed-Chr4:45823546 1.40E-142 dispersed
Sed04g3685 Sed-Chr4:45823546 Sed04g3686 Sed-Chr4:45823546 4.70E-202 tandem
Sed04g3686 Sed-Chr4:45823546 Sed04g3687 Sed-Chr4:45823546 2.10E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3686 - - - 0.0