Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3687 ATGCTGTTTGGGGTGATTGGTGTTTCTATATCTGTACTCATTATAACGTCTGGTAGTCAATGGCTGTTTCCAAGGATGGGCTTCCATGGTCTGTCAGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCTTGCAGGTACTACACCCAGAGGAAACACCTTTACTCTACAGCCTTGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAAGCTTAACAGCAAGACAGCCCTTCATGTTTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACTGGTCTTCTAACAGCATATATTCTAAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAACGGTTTTAATGGCTTACCTGTCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACTGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACCGATAATTCAAAAATAACCACCAGGCATGTATTTGCAATGATGTCATTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGAATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGTGTGGAGAAGTTGCTTGGTACATATAGCATAATAGTCTTCTTGATACTACTTGGTCGTGCGGCCTTTGTATTTCCCCTATCTGCTATATCTAATTACTTTAATAAGCGTGAAGATAGATCGTCAACGTCTTCTATAATCACTTTTAAACAACAGATCATAATATGGTGGGCTGGACTAATGAGAGGAGCTGTATCCATTGCTTTGGCTTTCAAACAGTTCACCTATTCTGGGGTAACACTGGATCCAACCAACGCAACAATGGTTACCATCACCACAGTTGTTGTACTCTTCACTACGGTGGTATTTGGGTTTCTAACAAAGCCTCTCATAATATGTCTGCATCCTCTCAACCAAGCAACTAACAATGCAAGCAACTCCGGACCGAAGTTCACCGAAGAGGACATAACTCTCCCTCTGTTGTCTATGGAAGAGTCGACTGCAACCAACGTCCTCCGCGCAAAGGATAGTTTGTCAATGTTAATGGAGAGGCCTGTGTACACCACACATTTCTTTTGGAGGAAGTTTGATGATACATACATGAGACCTATATTCGGAGGGCCTCGCCATAACCAACCTAGTGGTTCGGGTTGTTAG 1266 42.18 MLFGVIGVSISVLIITSGSQWLFPRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHPEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITKLNSKTALHVFGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAITVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDNSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSVEKLLGTYSIIVFLILLGRAAFVFPLSAISNYFNKREDRSSTSSIITFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTLDPTNATMVTITTVVVLFTTVVFGFLTKPLIICLHPLNQATNNASNSGPKFTEEDITLPLLSMEESTATNVLRAKDSLSMLMERPVYTTHFFWRKFDDTYMRPIFGGPRHNQPSGSGC 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45823546 45832965 + Sed0001968.3 Sed04g3687 712290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3687 421 Gene3D - 32 84 - -
Sed04g3687 421 PANTHER SODIUM/HYDROGEN EXCHANGER 1 413 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Sed04g3687 421 Pfam Sodium/hydrogen exchanger family 2 334 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3687 Sed-Chr4:45823546 Sed04g3689 Sed-Chr4:45823546 1.90E-161 dispersed
Sed04g3686 Sed-Chr4:45823546 Sed04g3687 Sed-Chr4:45823546 2.10E-202 tandem
Sed04g3687 Sed-Chr4:45823546 Sed04g3688 Sed-Chr4:45823546 7.90E-176 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3687 - - - 0.0