Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3689 ATGGAAATGCTCGAATCTTTCGAGAACTTCGGCAGCGACCACGCCCAGGTCGTCCCCTTGACGCTGTTCGTCGCCGTTCTCTGTCTGTGCCTGGTTATCGGCCACTTGCTCGAAGAAAATCGATGGGTTAACGAATCTATCACCGCCATTATCATTGGAGGTGTTACTGGAACAATCATATTGGTCTGTAGCAAGGGGAAAAATTCACATATCCTAACTTTTAATGAAGAAGTGTTCTTCATATATCTTCTTCCACCAATAATTTTCAATGCTGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCATAATTTCTTGACCATTATGCTGTTTGGGGTGATTGGTGTTTCTATATCTGTACTCATTATAACGTCTGGTAGTCAATGGCTGTTTCCAAGGATGGGCTTCCATGGTCTGTCAGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCTTGCAGGTACTACACCCAGAGGAAACACCTTTACTCTACAGCCTTGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAAGCTTAACAGCAAGACAGCCCTTCATGTTTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACTGGTCTTCTAACAGCATATATTCTAAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAACGGTTTTAATGGCTTACCTGTCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACTGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACCGATAATTCAAAAATAACCACCAGGCATGTATTTGCAATGATGTCATTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGAATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGTGTGGAGAAGTTGCTTGGTACATATAGCATAATAGTCTTCTTGATACTACTTGGTCGTGCGGCCTTTGTATTTCCCCTATCTGCTATATCTAATTACTTTAATAAGCGTGAAGATAGATCGTCAACGTCTTCTATAATCACTTTTAAACAACAGATCATAATATGGTGGGCTGGACTAATGAGAGGAGCTGTATCCATTGCTTTGGCTTTCAAACAGGCGAGTCTTTCTTTCTGCTTAGAACTGTTCATTGATGCAATTCTTGAGTACATTTTCTGA 1269 40.82 MEMLESFENFGSDHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGVTGTIILVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVSISVLIITSGSQWLFPRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHPEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITKLNSKTALHVFGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAITVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDNSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSVEKLLGTYSIIVFLILLGRAAFVFPLSAISNYFNKREDRSSTSSIITFKQQIIIWWAGLMRGAVSIALAFKQASLSFCLELFIDAILEYIF 422
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 45823546 45832965 + Sed0001968.5 Sed04g3689 712292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3689 422 Gene3D - 139 191 - -
Sed04g3689 422 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3689 422 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3689 422 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3689 422 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3689 422 PANTHER SODIUM/HYDROGEN EXCHANGER 17 403 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Sed04g3689 422 Pfam Sodium/hydrogen exchanger family 28 401 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3687 Sed-Chr4:45823546 Sed04g3689 Sed-Chr4:45823546 1.90E-161 dispersed
Sed04g3689 Sed-Chr4:45823546 Sed09g1199 Sed-Chr9:36182154 1.10E-132 dispersed
Sed04g3688 Sed-Chr4:45823546 Sed04g3689 Sed-Chr4:45823546 1.00E-226 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3689 - - - 0.0