Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g3689 | ATGGAAATGCTCGAATCTTTCGAGAACTTCGGCAGCGACCACGCCCAGGTCGTCCCCTTGACGCTGTTCGTCGCCGTTCTCTGTCTGTGCCTGGTTATCGGCCACTTGCTCGAAGAAAATCGATGGGTTAACGAATCTATCACCGCCATTATCATTGGAGGTGTTACTGGAACAATCATATTGGTCTGTAGCAAGGGGAAAAATTCACATATCCTAACTTTTAATGAAGAAGTGTTCTTCATATATCTTCTTCCACCAATAATTTTCAATGCTGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCATAATTTCTTGACCATTATGCTGTTTGGGGTGATTGGTGTTTCTATATCTGTACTCATTATAACGTCTGGTAGTCAATGGCTGTTTCCAAGGATGGGCTTCCATGGTCTGTCAGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCTTGCAGGTACTACACCCAGAGGAAACACCTTTACTCTACAGCCTTGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAAGCTTAACAGCAAGACAGCCCTTCATGTTTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACTGGTCTTCTAACAGCATATATTCTAAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAACGGTTTTAATGGCTTACCTGTCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACTGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACCGATAATTCAAAAATAACCACCAGGCATGTATTTGCAATGATGTCATTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGAATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGTGTGGAGAAGTTGCTTGGTACATATAGCATAATAGTCTTCTTGATACTACTTGGTCGTGCGGCCTTTGTATTTCCCCTATCTGCTATATCTAATTACTTTAATAAGCGTGAAGATAGATCGTCAACGTCTTCTATAATCACTTTTAAACAACAGATCATAATATGGTGGGCTGGACTAATGAGAGGAGCTGTATCCATTGCTTTGGCTTTCAAACAGGCGAGTCTTTCTTTCTGCTTAGAACTGTTCATTGATGCAATTCTTGAGTACATTTTCTGA | 1269 | 40.82 | MEMLESFENFGSDHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGVTGTIILVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVSISVLIITSGSQWLFPRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHPEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITKLNSKTALHVFGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAITVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDNSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSVEKLLGTYSIIVFLILLGRAAFVFPLSAISNYFNKREDRSSTSSIITFKQQIIIWWAGLMRGAVSIALAFKQASLSFCLELFIDAILEYIF | 422 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 45823546 | 45832965 | + | Sed0001968.5 | Sed04g3689 | 712292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g3689 | 422 | Gene3D | - | 139 | 191 | - | - | |
| Sed04g3689 | 422 | PRINTS | Na+/H+ exchanger signature | 92 | 106 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3689 | 422 | PRINTS | Na+/H+ exchanger signature | 78 | 89 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3689 | 422 | PRINTS | Na+/H+ exchanger signature | 107 | 115 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3689 | 422 | PRINTS | Na+/H+ exchanger signature | 147 | 157 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed04g3689 | 422 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 403 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Sed04g3689 | 422 | Pfam | Sodium/hydrogen exchanger family | 28 | 401 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3687 | Sed-Chr4:45823546 | Sed04g3689 | Sed-Chr4:45823546 | 1.90E-161 | dispersed | |
| Sed04g3689 | Sed-Chr4:45823546 | Sed09g1199 | Sed-Chr9:36182154 | 1.10E-132 | dispersed | |
| Sed04g3688 | Sed-Chr4:45823546 | Sed04g3689 | Sed-Chr4:45823546 | 1.00E-226 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g3689 | - | - | - | 0.0 |