Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3695 ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGGAGCTTTAAAACTCTCTGAAGATATCAGTGGCATGATTTCTGAGAGGAGTTCACATGCTGCATCGGGACCGGAAGCTCAACGTCATGCCTCGGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGTCGCAGGGACATGATTGCAAATTTGAGAACAAAAGCTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCCAACCGCGATAGCCTACTTGGTCCAGAAATAAAGCCAGCGGATGTTATGAACAGAACAAATGGCTTGGACAACCAAGGGCTAGTTGGTTTTCAACGACAAGTTATGAGAGAGCAAGATGAAGACCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCTTTGGCTGTGAATGAGGAACTTACCCTTCACACAAGACTTATTGATGATTTAGATGAACATGTGGATGTTACAGATTCACGATTACTGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAACGGACCAAGGGTGGTTGCACTTGCCTGTCGATGATTTTCTCAGTTGTTGGTATTGTTGGTCTTATCGCTGTTATATGGCTACTCATCAAGTATTTGTAA 702 42.59 MAYTLESWTKEYNGALKLSEDISGMISERSSHAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRTKANQMASTLNMSNFANRDSLLGPEIKPADVMNRTNGLDNQGLVGFQRQVMREQDEDLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLLRVQKRLAILNKRTKGGCTCLSMIFSVVGIVGLIAVIWLLIKYL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45866744 45870043 - Sed0019395.1 Sed04g3695 712298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3695 233 SMART tSNARE_6 132 199 IPR000727 -
Sed04g3695 233 CDD SNARE_Qc 140 197 - -
Sed04g3695 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Sed04g3695 233 PANTHER SYNTAXIN 18 213 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed04g3695 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Sed04g3695 233 FunFam syntaxin-51 isoform X2 139 201 - -
Sed04g3695 233 Gene3D - 138 201 - -
Sed04g3695 233 Pfam SNARE domain 174 224 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3695 Sed-Chr4:45866744 Sed07g2703 Sed-Chr7:42311331 8.10E-106 dispersed
Sed04g3695 Sed-Chr4:45866744 Sed07g2702 Sed-Chr7:42311331 8.10E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3695 K08503 - csv:101208669 416.387