Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3695 | ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGGAGCTTTAAAACTCTCTGAAGATATCAGTGGCATGATTTCTGAGAGGAGTTCACATGCTGCATCGGGACCGGAAGCTCAACGTCATGCCTCGGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGTCGCAGGGACATGATTGCAAATTTGAGAACAAAAGCTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCCAACCGCGATAGCCTACTTGGTCCAGAAATAAAGCCAGCGGATGTTATGAACAGAACAAATGGCTTGGACAACCAAGGGCTAGTTGGTTTTCAACGACAAGTTATGAGAGAGCAAGATGAAGACCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCTTTGGCTGTGAATGAGGAACTTACCCTTCACACAAGACTTATTGATGATTTAGATGAACATGTGGATGTTACAGATTCACGATTACTGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAACGGACCAAGGGTGGTTGCACTTGCCTGTCGATGATTTTCTCAGTTGTTGGTATTGTTGGTCTTATCGCTGTTATATGGCTACTCATCAAGTATTTGTAA | 702 | 42.59 | MAYTLESWTKEYNGALKLSEDISGMISERSSHAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRTKANQMASTLNMSNFANRDSLLGPEIKPADVMNRTNGLDNQGLVGFQRQVMREQDEDLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLLRVQKRLAILNKRTKGGCTCLSMIFSVVGIVGLIAVIWLLIKYL | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 45866744 | 45870043 | - | Sed0019395.1 | Sed04g3695 | 712298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3695 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
Sed04g3695 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
Sed04g3695 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 199 | - | - | |
Sed04g3695 | 233 | PANTHER | SYNTAXIN | 18 | 213 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed04g3695 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - | |
Sed04g3695 | 233 | FunFam | syntaxin-51 isoform X2 | 139 | 201 | - | - | |
Sed04g3695 | 233 | Gene3D | - | 138 | 201 | - | - | |
Sed04g3695 | 233 | Pfam | SNARE domain | 174 | 224 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3695 | Sed-Chr4:45866744 | Sed07g2703 | Sed-Chr7:42311331 | 8.10E-106 | dispersed | |
Sed04g3695 | Sed-Chr4:45866744 | Sed07g2702 | Sed-Chr7:42311331 | 8.10E-106 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3695 | K08503 | - | csv:101208669 | 416.387 |