Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3719 ATGGTTTCTTCAGGGGACCAATTAGAGAACAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCAGATAGCCAATCGCAAGCGTCTCATGAGGCTCCTGGTGGAACTAATGCAGCAAACTCAAATCACAAATGCACTGCGGCTGCCGGGAATACTGTTGAAGAAGCTGTCAAGCAGCCTGACATTACGATTGAACAAGTCGATCGAGGAGGCATCTCTCATATAGTGTCTGAGGAAGTGACCCATAACCCAATTACTGCGGACCAGGAGTCGCAGCCTGATTTGAAAGTAAATATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAATGTGTTTGTTAGAAGCTATTACAGATGTACGTATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACCCACGATTGGAAAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACTTCAATCTCACATTCCAGTTCCTATTGGAGTTGTTAACATGGTTGAAGAAAAGTCAGATGAACATGCCTCTAGAAGTTCTCAAGATAAAGCCTCCATTGCGCTTGGCCAGACACCTCATAAAACTGAACCGACTGGTACGCTTCAACTGTCATTAGTCGTGGCCAGCGATAATGTAAAAGATGAAGCTTTGAAAAGGTCTAGGAATAATGATGACGTTGACTATGATGATACACCAGACTTGAATCGAGAGAAGAAAAGATGCAATCTGGACGCGACGGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTGTAACTCCTAGTGAGGGTGACATAGTCAATGATGGATACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAGGGCAATGCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTTCGTACAACGTATGAGGGTCACCACGACCATGATATGCCTCCTTCAAGGACTGTCACGTTGAACTCAGTTGGGTCCACAGCAGCCCAAAGTGACGAGACAATGAAAACAAAGTCGGTCGGTAGTTCCATTGGTCACGATATGGCGGTTCATGCTAGTAAGGATCCTCAAACCAATTCAAGTTCCGAAAGCAAATTAATCGAAAAGAATGGCAAGTCGAATGCAACAGAAGCAAATGATGGCATTATCCTGGATATGGTGGTAGTTCCAGTCCAGGAGTTGCGAGTGGACAAGATAAGCAGCTGA 1290 44.26 MVSSGDQLENKVDSDRLEHEQSSDSQSQASHEAPGGTNAANSNHKCTAAAGNTVEEAVKQPDITIEQVDRGGISHIVSEEVTHNPITADQESQPDLKVNITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTYPTCMVKKQLERTHDWKITDTVYFGQHDHPKLQSHIPVPIGVVNMVEEKSDEHASRSSQDKASIALGQTPHKTEPTGTLQLSLVVASDNVKDEALKRSRNNDDVDYDDTPDLNREKKRCNLDATVADKSTVESRVVVVTPSEGDIVNDGYRWRKYGQKLVKGNANPRSYYRCSSPGCPVKKHVERASHDPKVVRTTYEGHHDHDMPPSRTVTLNSVGSTAAQSDETMKTKSVGSSIGHDMAVHASKDPQTNSSSESKLIEKNGKSNATEANDGIILDMVVVPVQELRVDKISS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46005885 46008154 + Sed0023709.1 Sed04g3719 712322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3719 429 FunFam WRKY transcription factor 98 169 - -
Sed04g3719 429 SMART WRKY_cls 109 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 SMART WRKY_cls 282 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 FunFam WRKY transcription factor 268 343 - -
Sed04g3719 429 MobiDBLite consensus disorder prediction 1 46 - -
Sed04g3719 429 MobiDBLite consensus disorder prediction 380 404 - -
Sed04g3719 429 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 188 357 IPR044810 GO:0003700(InterPro)
Sed04g3719 429 SUPERFAMILY WRKY DNA-binding domain 104 167 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 ProSiteProfiles WRKY domain profile. 277 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 MobiDBLite consensus disorder prediction 23 46 - -
Sed04g3719 429 MobiDBLite consensus disorder prediction 381 404 - -
Sed04g3719 429 SUPERFAMILY WRKY DNA-binding domain 275 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 Gene3D WRKY domain 269 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3719 429 Gene3D WRKY domain 95 167 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3719 Sed-Chr4:46005885 Sed05g2082 Sed-Chr5:34023745 2.90E-178 dispersed
Sed04g3719 Sed-Chr4:46005885 Sed05g2081 Sed-Chr5:34023745 3.10E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38366 PF03106 WRKY 1.20E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3719 K18834 - csv:101212482 613.609