Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3719 | ATGGTTTCTTCAGGGGACCAATTAGAGAACAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCAGATAGCCAATCGCAAGCGTCTCATGAGGCTCCTGGTGGAACTAATGCAGCAAACTCAAATCACAAATGCACTGCGGCTGCCGGGAATACTGTTGAAGAAGCTGTCAAGCAGCCTGACATTACGATTGAACAAGTCGATCGAGGAGGCATCTCTCATATAGTGTCTGAGGAAGTGACCCATAACCCAATTACTGCGGACCAGGAGTCGCAGCCTGATTTGAAAGTAAATATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAATGTGTTTGTTAGAAGCTATTACAGATGTACGTATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACCCACGATTGGAAAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACTTCAATCTCACATTCCAGTTCCTATTGGAGTTGTTAACATGGTTGAAGAAAAGTCAGATGAACATGCCTCTAGAAGTTCTCAAGATAAAGCCTCCATTGCGCTTGGCCAGACACCTCATAAAACTGAACCGACTGGTACGCTTCAACTGTCATTAGTCGTGGCCAGCGATAATGTAAAAGATGAAGCTTTGAAAAGGTCTAGGAATAATGATGACGTTGACTATGATGATACACCAGACTTGAATCGAGAGAAGAAAAGATGCAATCTGGACGCGACGGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTGTAACTCCTAGTGAGGGTGACATAGTCAATGATGGATACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAGGGCAATGCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTTCGTACAACGTATGAGGGTCACCACGACCATGATATGCCTCCTTCAAGGACTGTCACGTTGAACTCAGTTGGGTCCACAGCAGCCCAAAGTGACGAGACAATGAAAACAAAGTCGGTCGGTAGTTCCATTGGTCACGATATGGCGGTTCATGCTAGTAAGGATCCTCAAACCAATTCAAGTTCCGAAAGCAAATTAATCGAAAAGAATGGCAAGTCGAATGCAACAGAAGCAAATGATGGCATTATCCTGGATATGGTGGTAGTTCCAGTCCAGGAGTTGCGAGTGGACAAGATAAGCAGCTGA | 1290 | 44.26 | MVSSGDQLENKVDSDRLEHEQSSDSQSQASHEAPGGTNAANSNHKCTAAAGNTVEEAVKQPDITIEQVDRGGISHIVSEEVTHNPITADQESQPDLKVNITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTYPTCMVKKQLERTHDWKITDTVYFGQHDHPKLQSHIPVPIGVVNMVEEKSDEHASRSSQDKASIALGQTPHKTEPTGTLQLSLVVASDNVKDEALKRSRNNDDVDYDDTPDLNREKKRCNLDATVADKSTVESRVVVVTPSEGDIVNDGYRWRKYGQKLVKGNANPRSYYRCSSPGCPVKKHVERASHDPKVVRTTYEGHHDHDMPPSRTVTLNSVGSTAAQSDETMKTKSVGSSIGHDMAVHASKDPQTNSSSESKLIEKNGKSNATEANDGIILDMVVVPVQELRVDKISS | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 46005885 | 46008154 | + | Sed0023709.1 | Sed04g3719 | 712322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3719 | 429 | FunFam | WRKY transcription factor | 98 | 169 | - | - | |
Sed04g3719 | 429 | SMART | WRKY_cls | 109 | 167 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | SMART | WRKY_cls | 282 | 341 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | FunFam | WRKY transcription factor | 268 | 343 | - | - | |
Sed04g3719 | 429 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Sed04g3719 | 429 | MobiDBLite | consensus disorder prediction | 380 | 404 | - | - | |
Sed04g3719 | 429 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | Pfam | WRKY DNA -binding domain | 283 | 340 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 188 | 357 | IPR044810 | GO:0003700(InterPro) | |
Sed04g3719 | 429 | SUPERFAMILY | WRKY DNA-binding domain | 104 | 167 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | ProSiteProfiles | WRKY domain profile. | 277 | 342 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
Sed04g3719 | 429 | MobiDBLite | consensus disorder prediction | 381 | 404 | - | - | |
Sed04g3719 | 429 | SUPERFAMILY | WRKY DNA-binding domain | 275 | 342 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | Gene3D | WRKY domain | 269 | 335 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g3719 | 429 | Gene3D | WRKY domain | 95 | 167 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3719 | Sed-Chr4:46005885 | Sed05g2082 | Sed-Chr5:34023745 | 2.90E-178 | dispersed | |
Sed04g3719 | Sed-Chr4:46005885 | Sed05g2081 | Sed-Chr5:34023745 | 3.10E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38366 | PF03106 | WRKY | 1.20E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3719 | K18834 | - | csv:101212482 | 613.609 |