Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3726 ATGGCCACTTCTGGTATCCATCAATCCGCCTTTGCAGGCCAGACTGCTTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCCCTGTCGGTGGCCGCTTCGCCATGCGACGAACCGTCAAGAGTGCTCCACAGAGCATATGGTATGGCGCAGATCGCCCAAAATACTTGGGACCATTCTCCGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGATACAGCCGGTCTGTCAGCAGATCCCGAGACTTTCGCAAAGAACCGTGAGCTTGAGGTGATCCACTCTCGATGGGCCATGCTTGGGGCATTAGGTTGTGTCTTCCCTGAGCTCCTTGCAAAGAATGGGGTTAAGTTCGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTCGGTAACCCAAACCTCGTCCATGCTCAGAGTATCCTTGCAATCTGGGCTGTCCAGGTTGTGCTGATGGGCTTTGTTGAAGGCTACCGGGTTGGTGGCGGTCCCCTTGGTGAAGGATTGGACCCAATTTACCCCGGAGGTTCTTTCGACCCACTCGGATTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAAGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTCCAGGCTATCGTCACCGGAAAGGGTCCTATTGAGAATCTCTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCATGGGCTTACGCCACCAACTTCGTCCCCGGAAAATGA 795 52.33 MATSGIHQSAFAGQTALKQSNELVRKVGPVGGRFAMRRTVKSAPQSIWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46021408 46023113 - Sed0013735.1 Sed04g3726 712329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3726 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 264 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed04g3726 264 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Sed04g3726 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Sed04g3726 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Sed04g3726 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3726 Sed-Chr4:46021408 Sed14g1562 Sed-Chr14:23798355 2.50E-119 dispersed
Sed04g3726 Sed-Chr4:46021408 Sed05g2091 Sed-Chr5:34076276 6.70E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3726 K08913 - csv:101212963 523.472