Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3747 ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTTAATGTGCTTCTTGTAAACACTGCACTTTCCATTTCCATGCTCAAATACATTGTTCGTTTGATCCTTCACATCGTAGGAATCCGTCTCTCATTACCATCATCCTTGATCCCATCATCAGATTCCTTGGAAGATTCCTCCGAGTTGGGGGATTCCAGTTTTGGTTCCTCTTGGAGTCACATCGAGACGTTTCGGAACCGGCATCCAATGATGAGGTTTGATAAAGTACAGGGCTCCGGACGTTGTGAACATGACTGCTCGGTGTGCTTAACTCAGTTCGAACCTGAGTCGGAGATAAATCACTTGTCTTGTGGTCATCTTTTCCACACAGAATGCTTGGAGAAGTGGTTGGATTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTTTAATGTCCAAAGAAGAGAAATCCGCCTTTTGGTGA 465 45.38 MGLSSLPAPSEGVLNVLLVNTALSISMLKYIVRLILHIVGIRLSLPSSLIPSSDSLEDSSELGDSSFGSSWSHIETFRNRHPMMRFDKVQGSGRCEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSKEEKSAFW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46195646 46198112 - Sed0005153.1 Sed04g3747 712350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3747 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 146 IPR013083 -
Sed04g3747 154 Pfam Ring finger domain 98 141 IPR001841 -
Sed04g3747 154 SUPERFAMILY RING/U-box 90 147 - -
Sed04g3747 154 PANTHER - 1 151 IPR044249 -
Sed04g3747 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Sed04g3747 154 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3747 Sed-Chr4:46195646 Sed05g0651 Sed-Chr5:4771702 8.50E-11 dispersed
Sed01g0593 Sed-Chr1:4307429 Sed04g3747 Sed-Chr4:46195646 3.70E-51 wgd
Sed04g3747 Sed-Chr4:46195646 Sed05g3047 Sed-Chr5:40855263 1.30E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3747 K16285 - csv:101215605 235.728