Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed04g3748	ATGGGTTACCTATGTGATTTCTGTACGCAACAACGGGCGATTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCCTGTCGAAGCGCCACTTGAGGACGTTGTTGTGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGCCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCGTCTGCCTCCATTTCGTCTCGGAAAAGGCAGCCAATCAATTGTTACTCAGACTGCCCGACGGCTGCAGAGCTCTCGTCTATCTGGCCATTTGTTCTCGATCTCCCTTCTGCAGGCGATGCTTGTGAGCAAGAGTTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCATGGGGCCCTGATGATAAAGCTGGTCAAAATGTACCTGGTGTAGATGAAACCAGTCAATTCTCAAATGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCTGAATATGGACCAACCAATTACTATGGATGCAACTTCGTCCGAGTTACACTGTTCTGGAACAAAAGGTCCTGCACTCGAAGATGACCTCTACGAGAATTTAAATTTGGATGAAGATAGTTTTAATCTTGAAAACTATGACGAACTATTTGGTGTATCTCTCAATTATTCAGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGAATCAAAGGCTTATCTGCCCCAAAATCTGGTTGCCCCGGTGCGAGTGCGACGGCTGCCGAGGGGGCACCTGTCAGTCTAGGTAACAATACGATGCGGCCAGCAACAAGTAATGCAGCGTCTGCAGATTCCGCGATGAGTGCAAAGACTGAGCCCATTCTTTGTTATAACAATAAGCAAGAGCTCACTAGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGCACAGCAGAACATCCAGACTGTGGAGCTTCATCCATGCTTCTAATGGGAGAGCCTTCGTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTGTGACTACGATCCACTGAGTCAAACCAGAAGCTACTGA	1242	45.65	MGYLCDFCTQQRAIVYCRSDAAALCLSCDRNVHSANALSKRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWPFVLDLPSAGDACEQELGLMSIAENSAVNAWGPDDKAGQNVPGVDETSQFSNVDKSIWYGSSSMPQYLSKPLNMDQPITMDATSSELHCSGTKGPALEDDLYENLNLDEDSFNLENYDELFGVSLNYSEELLENGGIDSLFRIKGLSAPKSGCPGASATAAEGAPVSLGNNTMRPATSNAASADSAMSAKTEPILCYNNKQELTSLSFSGMTGESSTAEHPDCGASSMLLMGEPSWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEACDYDPLSQTRSY	413

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	46204145	46209497	-	Sed0016954.1	Sed04g3748	712351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed04g3748	413	ProSiteProfiles	Zinc finger B-box type profile.	43	90	IPR000315	GO:0008270(InterPro)
	Sed04g3748	413	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 10	1	401	-	-
	Sed04g3748	413	SMART	bboxneu5	4	47	IPR000315	GO:0008270(InterPro)
	Sed04g3748	413	CDD	Bbox1_BBX-like	4	47	IPR049808	-
	Sed04g3748	413	Pfam	CCT motif	356	398	IPR010402	GO:0005515(InterPro)
	Sed04g3748	413	ProSiteProfiles	Zinc finger B-box type profile.	1	47	IPR000315	GO:0008270(InterPro)
	Sed04g3748	413	ProSiteProfiles	CCT domain profile.	356	398	IPR010402	GO:0005515(InterPro)

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed01g0130	Sed-Chr1:1157544	Sed04g3748	Sed-Chr4:46204145	2.70E-39	dispersed
	Sed04g3748	Sed-Chr4:46204145	Sed04g3750	Sed-Chr4:46204145	6.70E-212	dispersed
	Sed04g3748	Sed-Chr4:46204145	Sed04g3749	Sed-Chr4:46204145	6.70E-212	tandem
	Sed01g0594	Sed-Chr1:4319201	Sed04g3748	Sed-Chr4:46204145	4.70E-107	wgd
	Sed04g3748	Sed-Chr4:46204145	Sed05g2113	Sed-Chr5:34234146	1.70E-162	wgd
	Sed04g3748	Sed-Chr4:46204145	Sed05g3044	Sed-Chr5:40848055	1.10E-105	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	38367	PF06203	CCT	2.70E-16	CL0281	Sed	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed04g3748	-		-	-	0.0