Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3749 ATGGGTTACCTATGTGATTTCTGTACGCAACAACGGGCGATTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCCTGTCGAAGCGCCACTTGAGGACGTTGTTGTGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGCCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCGTCTGCCTCCATTTCGTCTCGGAAAAGGCAGCCAATCAATTGTTACTCAGACTGCCCGACGGCTGCAGAGCTCTCGTCTATCTGGCCATTTGTTCTCGATCTCCCTTCTGCAGGCGATGCTTGTGAGCAAGAGTTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCATGGGGCCCTGATGATAAAGCTGGTCAAAATGTACCTGGTGTAGATGAAACCAGTCAATTCTCAAATGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCTGAATATGGACCAACCAATTACTATGGATGCAACTTCGTCCGAGTTACACTGTTCTGGAACAAAAGGTCCTGCACTCGAAGATGACCTCTACGAGAATTTAAATTTGGATGAAGATAGTTTTAATCTTGAAAACTATGACGAACTATTTGGTGTATCTCTCAATTATTCAGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGAATCAAAGGCTTATCTGCCCCAAAATCTGGTTGCCCCGGTGCGAGTGCGACGGCTGCCGAGGGGGCACCTGTCAGTCTAGGTAACAATACGATGCGGCCAGCAACAAGTAATGCAGCGTCTGCAGATTCCGCGATGAGTGCAAAGACTGAGCCCATTCTTTGTTATAACAATAAGCAAGAGCTCACTAGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGCACAGCAGAACATCCAGACTGTGGAGCTTCATCCATGCTTCTAATGGGAGAGCCTTCGTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTGTGACTACGATCCACTGAGTCAAACCAGAAGCTACTGA 1242 45.65 MGYLCDFCTQQRAIVYCRSDAAALCLSCDRNVHSANALSKRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWPFVLDLPSAGDACEQELGLMSIAENSAVNAWGPDDKAGQNVPGVDETSQFSNVDKSIWYGSSSMPQYLSKPLNMDQPITMDATSSELHCSGTKGPALEDDLYENLNLDEDSFNLENYDELFGVSLNYSEELLENGGIDSLFRIKGLSAPKSGCPGASATAAEGAPVSLGNNTMRPATSNAASADSAMSAKTEPILCYNNKQELTSLSFSGMTGESSTAEHPDCGASSMLLMGEPSWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEACDYDPLSQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46204145 46209497 - Sed0016954.2 Sed04g3749 712352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3749 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Sed04g3749 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 401 - -
Sed04g3749 413 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed04g3749 413 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed04g3749 413 Pfam CCT motif 356 398 IPR010402 GO:0005515(InterPro)
Sed04g3749 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed04g3749 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3749 Sed-Chr4:46204145 Sed05g2113 Sed-Chr5:34234146 1.70E-162 dispersed
Sed04g3748 Sed-Chr4:46204145 Sed04g3749 Sed-Chr4:46204145 6.70E-212 tandem
Sed04g3749 Sed-Chr4:46204145 Sed04g3750 Sed-Chr4:46204145 6.70E-212 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38368 PF06203 CCT 2.70E-16 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3749 - - - 0.0