Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3750 ATGGGTTACCTATGTGATTTCTGTACGCAACAACGGGCGATTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCCTGTCGAAGCGCCACTTGAGGACGTTGTTGTGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGCCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCGTCTGCCTCCATTTCGTCTCGGAAAAGGCAGCCAATCAATTGTTACTCAGACTGCCCGACGGCTGCAGAGCTCTCGTCTATCTGGCCATTTGTTCTCGATCTCCCTTCTGCAGGCGATGCTTGTGAGCAAGAGTTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCATGGGGCCCTGATGATAAAGCTGGTCAAAATGTACCTGGTGTAGATGAAACCAGTCAATTCTCAAATGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCTGAATATGGACCAACCAATTACTATGGATGCAACTTCGTCCGAGTTACACTGTTCTGGAACAAAAGGTCCTGCACTCGAAGATGACCTCTACGAGAATTTAAATTTGGATGAAGATAGTTTTAATCTTGAAAACTATGACGAACTATTTGGTGTATCTCTCAATTATTCAGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGAATCAAAGGCTTATCTGCCCCAAAATCTGGTTGCCCCGGTGCGAGTGCGACGGCTGCCGAGGGGGCACCTGTCAGTCTAGGTAACAATACGATGCGGCCAGCAACAAGTAATGCAGCGTCTGCAGATTCCGCGATGAGTGCAAAGACTGAGCCCATTCTTTGTTATAACAATAAGCAAGAGCTCACTAGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGCACAGCAGAACATCCAGACTGTGGAGCTTCATCCATGCTTCTAATGGGAGAGCCTTCGTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTGTGACTACGATCCACTGAGTCAAACCAGAAGCTACTGA 1242 45.65 MGYLCDFCTQQRAIVYCRSDAAALCLSCDRNVHSANALSKRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWPFVLDLPSAGDACEQELGLMSIAENSAVNAWGPDDKAGQNVPGVDETSQFSNVDKSIWYGSSSMPQYLSKPLNMDQPITMDATSSELHCSGTKGPALEDDLYENLNLDEDSFNLENYDELFGVSLNYSEELLENGGIDSLFRIKGLSAPKSGCPGASATAAEGAPVSLGNNTMRPATSNAASADSAMSAKTEPILCYNNKQELTSLSFSGMTGESSTAEHPDCGASSMLLMGEPSWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEACDYDPLSQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46204145 46209497 - Sed0016954.3 Sed04g3750 712353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3750 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Sed04g3750 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 401 - -
Sed04g3750 413 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed04g3750 413 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed04g3750 413 Pfam CCT motif 356 398 IPR010402 GO:0005515(InterPro)
Sed04g3750 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed04g3750 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3750 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3748 Sed-Chr4:46204145 Sed04g3750 Sed-Chr4:46204145 6.70E-212 dispersed
Sed04g3750 Sed-Chr4:46204145 Sed05g2113 Sed-Chr5:34234146 1.70E-162 dispersed
Sed04g3749 Sed-Chr4:46204145 Sed04g3750 Sed-Chr4:46204145 6.70E-212 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1659 . 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.8 2.7e-76 283.5
Sed11g1127 . 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 56.2 3.7e-65 246.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0600 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0598 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed04g3907 . 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 56.9 4.8e-51 199.5
Sed04g1531 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 1.7e-74 277.3
Sed13g0882 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 8.2e-55 211.1
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 63.1 1.6e-53 206.8
Sed10g0979 . 1 144 C2C2-CO-like Transcription Factor Family AT2G21320 65.1 6.7e-49 191.4
Sed13g0882 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.2 2.3e-55 213.0
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.3e-53 207.2
Sed10g0979 . 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 67.8 3.4e-51 199.1
Sed04g3907 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 56.3 2.4e-52 203.4
Sed03g1716 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed03g1717 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed05g3539 . 1 177 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 2.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38369 PF06203 CCT 2.70E-16 CL0281 Sed TF