Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3758 ATGAACTCTGATTGTTCTTCTAACTTGGGGTTTTTGTGTGTATTGAACAAAATGATCTTCAACCATAAGAAAAGCTCACTGTTGAGCAAAATATTTCCTCTGGAACTTCCTTGCAGTACATTTCGGCATGCAAGAGAGAAAGATCAGAAAATAGATGAGAAGAGAAAAGCCAAAGAGCCATCAAGCTCTAATCTCTCCTCTTCTGAGTATCAAATCAGCCCTTCAGAGAAAAGGAAACCAATTGAAGTCTTTCAGGTGCTTGCGAGTTCAGGAGATGGCCAGTCGAAAATCGAAAGTAATGCCACTCATGAGCAGGATGAGGCAAAATCACCCCTCACTTCATTCTGTCCTGCTGTCAGCAAGGAAGCATCCAGAAAATGGATGGCATTTGATAGTGAAAACTTCGATATTACAAAGACATACTCAAAGAACTTCAGTCGAAGCTTTGGGTCATCTTCTATTGAACTCTTAGAAAAGATCATGACAGAGGGGACTGTAGTGGAGGACAACAGTGGTTTATTGTCACTGCAACTGACATATGTTATCTCGGATGCAATAAAACCGGATTGTCCCATCGTGTTTGCCAGCCATACGTTCTTGGTTATGACTGGATATACGATGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCGGAGACAGATAAGAAAGAAGTAGCCAAAATACGAGACGCGATCAGAAAGGGTAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAATATTATCAAATTTATTGGAATGCAAGTTGAGATCGGCAAAAGCACGAAAGAAAAGGAGAAGACCACGAGGTCCACGTCCATTACGGAGGTCCAAGCTGTGAAAGGTCTAAGATCCTACATTCAGTTTAAAAGGCATGATGCTTATGGAAAGCACGAAGAGCCAGAAACAACTGACATTGGTTATGCTTTGCACAAGGCTGTGGATGATGAGAATATTGGCACACCTAATAATCAAAAGGCTCAGTTAGATCCCATAAATGGTCTACAGGATTCGAGCACAGAATCAGGATTATCTGGTCTTGTTTCTTCAAAGGGGTTCAATGAAAGGACTCTAGGCTCTGAAGTAGAACGTGAAGAAAAGACAGTGATTGAGATATCAGTTTTGAAGCCTAAAGTCAGTGATCATGTTGCTAAAAGAGAAAGGGATATACGTGAAGGAATTGAATTGACAACCACATTGGAACGAATAGAGAAGATATTTTTTATCACTAACCCAAGACTTCCTGATAATCCTATTATATTTGCGTCTGATAGATTTCTTGACTCAACAGAATACACGTGTGAAGAAGTTATAGGGCGGAACTTTTGGTTTCTTCAGGGACCAGAAACAAGCCATGTTGCTGTCTCAAAGATAAAAGATGCAATTGAAGAGCAGAGAGAAATCACCGTTCAGATTATCAACTATACAAAGAGTGGAAAAACATTCTCGAATTTATTCCATTTGCAGCCCATGTGTGATACGAAGGGTGAGCTTCAATACTTCATTGGTGTGCAACTTCATGTAGAACCTTCAACAGACCTACTCTTAGAACGAATGGAGCATAAGCTGGTCAAAGCAATAGCAGAAAATGTTGACAATGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTGTGGGGAATCTACTGTCAGCCAGTCATACCAAGGCCTCACAAGAAGTACAATTCTTCCTGGACAGCCATACAAGAGATTACCAGACATGGTGAAAAGATTGGACTTCATCATTTCAAGCCATTAAAACCACTTGGTTCTGGAGACATTGGCAGTGTTCATTTGGTAGAACTCAAAGGAACGGGTGAACTGTTTGCTATGAAGGCAATAGAGAAGTCAGCAATACTAAAGCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAGATCGTCTCTCTTTTGGACCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCCTACGCACATTTTTCTGATTATAGACTTTTGCCCCGGGGGAGAGTTATTTGCCTTTCTCGACAGGCAGCCGATGAAAATGTTCCAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTAGAGTACCTTCACTTTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAACATTCTACTCCAAAAGGATGGACATATAGTCCTCACTGATTTTGATTTATCATTTAAGACGTCTAACAGACAAACCATAGAATCTCCACCGTCGAAAAACACCAAGAGATCTAAACATAAATCGCTCCCAATGTTCGTCGTTGAACCTGTTGTAGAATTGAACTCGTTCATTGGAACCGATGAGTACATTGCTCCAGAGATCATAATTGGAGCAGGCCATAGTAGCTCGATTGACTGGTGGACTCTCGGTGTTTTGTTGTATGAGATGCTCTATGGTCGCACTCCATTCAAAGGCAAAAATAGGAAGAAAACATTTGCCAATATTTTGTTCAAGGACTTAACCTTCCCCATTAGTATTCAGGTAACTCTTGCAGCAAAGCAGCTGATCGATGCACTACTACAAAGAGACCCTGCACGTCGTTTAGGATCAAGTACCGGTGCCGACGAAATCAAACAACACCCTTTTTTCCGTCAAATAGATTGGCCTAAAATTCGAACCATGACCCCACCATCATCAGAAGTAGCTCTTCAATTAATTGAAAGAGATCCAAAAGCTAGTGATTTGAAATTGGAAGATGGAGTGCTCAGTCATTCAACAATGGACACTGATTTTTTCTAA 2835 41.34 MNSDCSSNLGFLCVLNKMIFNHKKSSLLSKIFPLELPCSTFRHAREKDQKIDEKRKAKEPSSSNLSSSEYQISPSEKRKPIEVFQVLASSGDGQSKIESNATHEQDEAKSPLTSFCPAVSKEASRKWMAFDSENFDITKTYSKNFSRSFGSSSIELLEKIMTEGTVVEDNSGLLSLQLTYVISDAIKPDCPIVFASHTFLVMTGYTMEEVIGRNCRFLQGPETDKKEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIGKSTKEKEKTTRSTSITEVQAVKGLRSYIQFKRHDAYGKHEEPETTDIGYALHKAVDDENIGTPNNQKAQLDPINGLQDSSTESGLSGLVSSKGFNERTLGSEVEREEKTVIEISVLKPKVSDHVAKRERDIREGIELTTTLERIEKIFFITNPRLPDNPIIFASDRFLDSTEYTCEEVIGRNFWFLQGPETSHVAVSKIKDAIEEQREITVQIINYTKSGKTFSNLFHLQPMCDTKGELQYFIGVQLHVEPSTDLLLERMEHKLVKAIAENVDNAVRELPDANLKPKNLWGIYCQPVIPRPHKKYNSSWTAIQEITRHGEKIGLHHFKPLKPLGSGDIGSVHLVELKGTGELFAMKAIEKSAILKRNKVHRACMEREIVSLLDHPFMPTLYSSFQTPTHIFLIIDFCPGGELFAFLDRQPMKMFQEEAARFYAAEVVIALEYLHFLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTSNRQTIESPPSKNTKRSKHKSLPMFVVEPVVELNSFIGTDEYIAPEIIIGAGHSSSIDWWTLGVLLYEMLYGRTPFKGKNRKKTFANILFKDLTFPISIQVTLAAKQLIDALLQRDPARRLGSSTGADEIKQHPFFRQIDWPKIRTMTPPSSEVALQLIERDPKASDLKLEDGVLSHSTMDTDFF 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46261632 46275570 + Sed0027314.1 Sed04g3758 712361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3758 944 CDD PAS 429 531 IPR000014 -
Sed04g3758 944 PANTHER FLIPPASE KINASE 1-RELATED 579 913 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed04g3758 944 MobiDBLite consensus disorder prediction 339 371 - -
Sed04g3758 944 SUPERFAMILY Protein kinase-like (PK-like) 586 919 IPR011009 -
Sed04g3758 944 Pfam Protein kinase domain 611 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3758 944 MobiDBLite consensus disorder prediction 92 111 - -
Sed04g3758 944 Pfam PAS domain 437 527 IPR000014 -
Sed04g3758 944 Pfam PAS domain 187 281 IPR000014 -
Sed04g3758 944 MobiDBLite consensus disorder prediction 47 76 - -
Sed04g3758 944 CDD PAS 192 281 IPR000014 -
Sed04g3758 944 Gene3D Transferase(Phosphotransferase) domain 1 693 909 - -
Sed04g3758 944 CDD STKc_phototropin_like 607 909 - -
Sed04g3758 944 ProSiteProfiles PAC domain profile. 239 293 IPR000700 -
Sed04g3758 944 NCBIfam PAS domain S-box protein 441 527 IPR000014 -
Sed04g3758 944 NCBIfam PAS domain S-box protein 192 288 IPR000014 -
Sed04g3758 944 Gene3D PAS domain 404 561 - -
Sed04g3758 944 SUPERFAMILY PYP-like sensor domain (PAS domain) 187 279 IPR035965 -
Sed04g3758 944 Gene3D Phosphorylase Kinase; domain 1 608 692 - -
Sed04g3758 944 SUPERFAMILY PYP-like sensor domain (PAS domain) 430 528 IPR035965 -
Sed04g3758 944 Gene3D PAS domain 180 329 - -
Sed04g3758 944 MobiDBLite consensus disorder prediction 341 371 - -
Sed04g3758 944 ProSiteProfiles Protein kinase domain profile. 609 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3758 944 FunFam Putative LOV domain-containing protein 693 907 - -
Sed04g3758 944 SMART pac_2 492 534 IPR001610 -
Sed04g3758 944 SMART pac_2 242 284 IPR001610 -
Sed04g3758 944 SMART serkin_6 609 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3758 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3758 944 ProSiteProfiles PAS repeat profile. 192 238 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2999 Sed-Chr4:41257136 Sed04g3758 Sed-Chr4:46261632 1.10E-19 dispersed
Sed04g3758 Sed-Chr4:46261632 Sed05g2908 Sed-Chr5:40036313 2.30E-231 dispersed
Sed06g1563 Sed-Chr6:40429758 Sed04g3758 Sed-Chr4:46261632 7.30E-22 dispersed
Sed12g1837 Sed-Chr12:29645402 Sed04g3758 Sed-Chr4:46261632 9.10E-27 dispersed
Sed01g0619 Sed-Chr1:4410541 Sed04g3758 Sed-Chr4:46261632 1.90E-267 wgd
Sed04g3758 Sed-Chr4:46261632 Sed05g3024 Sed-Chr5:40702391 8.50E-279 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79097 PF00069 Pkinase 3.70E-62 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3758 K20715 - csv:101213364 1326.23