Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3772 ATGGCTGCATTTGTAGCTATGGTAGTCTATTTGGCCCTTTTGCGAACACCCAACATCTCTGCGGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATACACCAAAGAAACAGATGGGTCAATCATTATAGAAGGTGCATGTGGTTATGGAGATCTGCATAAGATTAGCTATGGAAAACATAGTGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTAGACCATATCCTGTGGTGCTTGCAAGGAAGCCCGACCGTCATTCTGACTGCCACCGACTTCTGTCCTCCCAATTATGGCCTATCTTCCGATTATGGTGGGTGGTGCAATTTTCCGAAAGAGCACTTCGAGATGTCAGAGGCTGCATTTGCTGAGATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAATTGGTGGATTGAGATTCACAGTCGGTGGGAATTCTCACTTCTTTCAAGTACTGATTACCAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTGAAAGGATCAAGAACAGGATGGATACCTCTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAACCTTCACGGACAGCCTCTATCTTTCGAAGTTACCTCGAGCGGTGGTACAGCACTTACTTCCTACGGCGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGAAAACAATTTTGA 756 45.63 MAAFVAMVVYLALLRTPNISAAKDEEWKSATATYTKETDGSIIIEGACGYGDLHKISYGKHSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRIGGLRFTVGGNSHFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSGGTALTSYGVAPGNWQFGQTFEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46358086 46360779 - Sed0015122.1 Sed04g3772 712375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3772 251 SMART dpbb_1 62 149 IPR007112 -
Sed04g3772 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Sed04g3772 251 Gene3D - 12 155 IPR036908 -
Sed04g3772 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Sed04g3772 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Sed04g3772 251 SUPERFAMILY PHL pollen allergen 158 248 IPR036749 -
Sed04g3772 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Sed04g3772 251 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 Gene3D - 159 251 IPR036749 -
Sed04g3772 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Sed04g3772 251 CDD DPBB_EXPA_N 26 154 - -
Sed04g3772 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Sed04g3772 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3772 Sed-Chr4:46358086 Sed06g1515 Sed-Chr6:39836514 1.70E-72 dispersed
Sed04g3772 Sed-Chr4:46358086 Sed13g1396 Sed-Chr13:19376925 3.00E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3772 - - - 0.0