Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3783 ATGAACATGGTTTGGCTTCTTTTATTACTCATTTATATTCAAGGGATTTCAGTAGGGGCCTCAAGAAATGAAGTAGTGAAAATTGGAGCTATATTTTCACTCAGTTCTGTCAATGGGAAAGTGTCCAAGATTTCCATAGAGGCTGCTGAAAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCTATTTCCATACATGATGCAAATTACAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGATACAGTTGCCATCATCGGTCCACAGGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACAGCATTGGACCCGACGCTTTCGAGTTTGCAGTATCCATACTTCATCCAAACAGCTCCGAATGATCAATTCCAAATGACTGCAATAGCAGATATGATTGTTCAGTATGATTGGCACGACATAGTAGTTCTTTACACCGATGACGATCATTGTCGAAACGGTATGATTGGCTTAGTGGATAAGCTTGAAGAGAGAGGCTTGAAAATTTCCTGTAAAGAGGCACTTCCCCCTTACCCAACAGCAACTAGAACTCAAGTTCAAGCTGCACTAGCAAAGATTAAAATGATGGAATCTCGAGTAATAGTATTATACACGTTTTCAAAAACAGGTTTCTTGGTTTTCGAAGTGGCCCAAAGCCTTCGAATGATGGAAGCTGGATTTGTTTGGATAGCCTCTAGTTGGCTGTCAACAGTAATAGATTCTAATTCATCACTTCCCTTGAAAACTATCAACTCCATCCAAGGAGTTCTTACACTTCGTCTACACACACCCGATTCGAAAAGGAAGCAATCGTTTACATCGAATTGGAACAAGCTGAGTAATGGCTCCATTGGGTTGAATACATATGGGCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGATTGAAAGAGTTATTTGATCAAAATGGCACCATCTCATTCTCCAAAAATACTCATGTTGGTAGTCTTAGTGGGGAGAGCATGGATTTCAGTTCACTAGGCATATTTAATGAAGGAAAGGAGCTACTTAACAATTTATTGAATATCAACATGACTGGTTTGACAGGGCCTATTCAGTTTCTAGATAGATCCCCTTTACATCCTTCTTATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGATATTGGTCTAACTATTCCGGGTTATCTGTCGTGGCGCCAGAAACGTTGTATGAAAGATCGGTCAATCGGTCTACATCACCCCAACAGTTAAGCAGCATAGTGTGGCCTGGGGGATCGAAAATCAAACCTCGTGGTTGGGTTATTCCACTCGATGGAAGACGGTTAAGAATCGGTGTTCCACGCAGAGTTAGTTATCAGGAATTTGTGACACCAGGAAATGGTAATGGCACAGTCAAAGGATACTGCATTGATGTGTTTATTGCTGCCATCAAATTGCTTCCATATGCAGTTAATTACGAGTTCGTTTTGTTTGGAAATGGTGAGGAGAATCCTAACTACTTTCAGCTTGTAAATAATGTTGCATTGGAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGGTTGTCGATTTTACGCAGCCTTATATCGAGTCGGGGCTAGTTGTGTTGACCCCTGTCAAGAAGTTGAACTCAAGTCCTTTAGCATTCCTTCGCCCATTCTCACCAATGATGTGGGTCGTCATAGCATCCTTTTTCCTCCTCATTGGATTAGTTGTATGGATGCTCGAACATCGACAAAATGACGAATTTCGAGGACAACCTCGGACGCAATTTATCACAATCCTCTGGTTTGGCTTCTCCACTATGTTTTTTGCACATAGGGAAAATGTCGTGAGCACGCTAGGACGTATCGTGCTCATCGTCTGGCTATTCGTGGTTCTAATTATCAACTCGAGCTACACCGCGAATCTGACATCGATATTCACAGTGCAACATCTAGCCTCACCCATCACTGGGATTGATTCATTGATAAGTAGTCATGTGCCTATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGAGACCAACTAAACGTCCAAAAGTCTAGACTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCTGCGCTAAGAAACGGAACGGTCGGAGCTATCGTCGACGAACAGCCATATATTGATCTCTTTCTCACCGAGTATTGCGATTTTTCGATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTACCCCGAGACTCTCCATTAGCAGTGGATCTATCGACGGCGATTCTGAGTGTATCGGAGAACGGGCATCTCCAAAAGCTTCACGAGAAGTGGTTCTCAAGAAAATCGTGCAGTTCTGATGGCGATTCGGAGTTGGAGCAGCTTCAGTTGCAGAGCTTCACCGGCCTGTTCTCGATCTGCGCCGCCGTCTGTTTTTCGGCTCTTCTCCTTCACTTCCTCTACACTTTCTGCCAATTCAACCGCCATTTGAAGAACCAAGATCCTCCATCAGCATCTTCTTCTTCTTCTAACCCTACTCGGTGTCTGCGCAAATTCTTCGAGTTTGCGGACAAGAAGAAGAATCGAAAGGGGAACTGTTCCAAGAGGAACATCGAAGATACTGATGCGCTTTCCGGCGATCCTCCATAG 2703 42.62 MNMVWLLLLLIYIQGISVGASRNEVVKIGAIFSLSSVNGKVSKISIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPTLSSLQYPYFIQTAPNDQFQMTAIADMIVQYDWHDIVVLYTDDDHCRNGMIGLVDKLEERGLKISCKEALPPYPTATRTQVQAALAKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEAGFVWIASSWLSTVIDSNSSLPLKTINSIQGVLTLRLHTPDSKRKQSFTSNWNKLSNGSIGLNTYGLYAYDTVWMIAKGLKELFDQNGTISFSKNTHVGSLSGESMDFSSLGIFNEGKELLNNLLNINMTGLTGPIQFLDRSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYERSVNRSTSPQQLSSIVWPGGSKIKPRGWVIPLDGRRLRIGVPRRVSYQEFVTPGNGNGTVKGYCIDVFIAAIKLLPYAVNYEFVLFGNGEENPNYFQLVNNVALEEFDAAVGDIAIVTSRTKVVDFTQPYIESGLVVLTPVKKLNSSPLAFLRPFSPMMWVVIASFFLLIGLVVWMLEHRQNDEFRGQPRTQFITILWFGFSTMFFAHRENVVSTLGRIVLIVWLFVVLIINSSYTANLTSIFTVQHLASPITGIDSLISSHVPIGFQVGSFAESYLRDQLNVQKSRLIALGSPEEYAAALRNGTVGAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFALPRDSPLAVDLSTAILSVSENGHLQKLHEKWFSRKSCSSDGDSELEQLQLQSFTGLFSICAAVCFSALLLHFLYTFCQFNRHLKNQDPPSASSSSSNPTRCLRKFFEFADKKKNRKGNCSKRNIEDTDALSGDPP 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46405678 46411470 - Sed0020026.1 Sed04g3783 712386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3783 900 CDD GluR_Plant 459 797 - -
Sed04g3783 900 SUPERFAMILY Periplasmic binding protein-like II 438 799 - -
Sed04g3783 900 Gene3D - 724 804 - -
Sed04g3783 900 FunFam Glutamate receptor 572 702 - -
Sed04g3783 900 MobiDBLite consensus disorder prediction 878 893 - -
Sed04g3783 900 Gene3D - 45 389 - -
Sed04g3783 900 MobiDBLite consensus disorder prediction 878 900 - -
Sed04g3783 900 SMART GluR_14 462 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed04g3783 900 Pfam Receptor family ligand binding region 44 399 IPR001828 -
Sed04g3783 900 FunFam Glutamate receptor 141 301 - -
Sed04g3783 900 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
Sed04g3783 900 FunFam Glutamate receptor 456 572 - -
Sed04g3783 900 Gene3D - 141 414 - -
Sed04g3783 900 Gene3D - 454 571 - -
Sed04g3783 900 Pfam Ligand-gated ion channel 799 828 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed04g3783 900 Gene3D - 572 710 - -
Sed04g3783 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 877 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed04g3783 900 FunFam Glutamate receptor 698 801 - -
Sed04g3783 900 Pfam Bacterial extracellular solute-binding proteins, family 3 471 581 IPR001638 -
Sed04g3783 900 PIRSF IGluLR_plant 1 896 IPR017103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3783 Sed-Chr4:46405678 Sed10g0515 Sed-Chr10:3349165 6.40E-276 dispersed
Sed04g3783 Sed-Chr4:46405678 Sed05g2149 Sed-Chr5:34485877 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3783 K05387 - csv:101208602 1425.99