Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3824 ATGGTTATGGATGACAACGAGAGCTGTGGAAGTAGAGCGTACGACTCGTCGTCGCCGGCGCAGACTCGGCAGCAGCGGCAGAAGTATGAGGTCTACAATGAGGTTCTCCGCCGTTTGAAGGATTCCGGCAACGACGAGGCGATTCAGCCTGGTTTCGACGACGAATTGTGGCTTCATTTCAATCGCCTTCCTACTCGATACGCTCTTGACGTTAATGTGGAGAGGGCAGAAGATGTTCTCATGCACAAAAGATTATTGCAATATGCTCACGATCCTGCAAATCGACCTGCGATTGAAGTTCGCCTAGTTCAGGTCCAAGCCATTTCTGATGGGAATTCGACTGATTTTGCTGATTCATATCCTGTAAAAAACACTGATCATAGAACTGCAAATTTCGTGAGCAGACAGAGCATACATCCACCACCTGCATTTGGGTCATCTCCTAACCTTGAAGCCCTCGCCCTTGAAGCTAATAATGCTCAAGATCAGGAGAATGATCATTCTGTACATGCCAGAACACAATTTTTCCGGCCAATGCATGAAATAACTTTCTCGACGGATGACAAGCCAAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGCCTGAACATCCAGGAGGCACATGCATTTTCCACTGTGGACGGCTACTCCTTGGATGTTTTTGTGGTTGATGGTTGGCCCTATGAGGAAACGGAGCGATTGAAGACTGCATTAGAGAAGGAAGTCTTACAGGCTGAGAGTCGGGCTTGGCCAAATCATAAATCCTTGTCTCCTGTAGGGGAGCGGGATATACCAATTAAATCTGAACCTGATCGAGTGGAAATACCCACAGATGGGACTGATGTATGGGAAATCAATCCTAGACATCTGAAGTTCGAGCATAAAGTTGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAAGAAGTGGCTATTAAAGTCCTTAAACCTGAACGCATAAATTCAGATATGCAAAGTGAGTTTGCTCAGGAGGTATACATTATGAGAAAAGTCAGGCATAAGAACGTCGTACAGTTTATAGGTGCATGTACTAAGCCTCCAAGCTTGTGCATTATAACAGAATTCATGTCCGGTGGAAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTCAGGCTTCCAACTTTGCTCAAGGTAGCTATTGATGTCTCCAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTAAAGGCCGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGTGTTGCTAGAGTGCAATCTCAATCAGGAGTTATGACTGCAGAAACTGGTACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCTTATGATCACAAGGCTGATGTTTTCAGTTTCGGAATTGTCTTATGGGAGCTACTAACTGGAAAGGTACCTTACGAATTTCTAACCCCTTTACAAGCTGCAGTCGGAGTGGTACAAAAGGGTTTACGACCTACTATTCCAAAGCACACCAATCTGAAGCTGACTGATTTGCTGGAAAAATGTTGGCAGCAAGACCCGTCAAGCAGGCCCAACTTCTCTGAAATTATCGACATATTGTTACAGATAACTAAGGAAGTTGCAGAAGACGGCGACGACCGACGAAGGGAGAAGAGTGGAGGATTCCTTTCTGTATTGAGACGAAAAAGCAACGAAAAGTGA 1728 44.56 MVMDDNESCGSRAYDSSSPAQTRQQRQKYEVYNEVLRRLKDSGNDEAIQPGFDDELWLHFNRLPTRYALDVNVERAEDVLMHKRLLQYAHDPANRPAIEVRLVQVQAISDGNSTDFADSYPVKNTDHRTANFVSRQSIHPPPAFGSSPNLEALALEANNAQDQENDHSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLQAESRAWPNHKSLSPVGERDIPIKSEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERINSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIITEFMSGGSVYDYLHKQKGTFRLPTLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVQSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKVPYEFLTPLQAAVGVVQKGLRPTIPKHTNLKLTDLLEKCWQQDPSSRPNFSEIIDILLQITKEVAEDGDDRRREKSGGFLSVLRRKSNEK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46695465 46703768 + Sed0022547.1 Sed04g3824 712427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3824 575 SMART serkin_6 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 MobiDBLite consensus disorder prediction 10 26 - -
Sed04g3824 575 SUPERFAMILY ACT-like 179 243 IPR045865 -
Sed04g3824 575 Gene3D Phosphorylase Kinase; domain 1 283 371 - -
Sed04g3824 575 CDD ACT_TyrKc 179 246 - -
Sed04g3824 575 MobiDBLite consensus disorder prediction 1 26 - -
Sed04g3824 575 FunFam serine/threonine-protein kinase HT1 372 562 - -
Sed04g3824 575 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
Sed04g3824 575 SUPERFAMILY Protein kinase-like (PK-like) 276 542 IPR011009 -
Sed04g3824 575 Pfam Protein tyrosine and serine/threonine kinase 293 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 Gene3D Transferase(Phosphotransferase) domain 1 372 571 - -
Sed04g3824 575 CDD STKc_MAP3K-like 299 542 - -
Sed04g3824 575 Coils Coil 231 251 - -
Sed04g3824 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PANTHER SERINE-THREONINE PROTEIN KINASE 92 544 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g3824 575 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3824 575 ProSiteProfiles ACT domain profile. 181 264 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2464 Sed-Chr1:18350950 Sed04g3824 Sed-Chr4:46695465 1.20E-167 dispersed
Sed01g2465 Sed-Chr1:18350950 Sed04g3824 Sed-Chr4:46695465 1.30E-169 dispersed
Sed03g0477 Sed-Chr3:2890524 Sed04g3824 Sed-Chr4:46695465 3.00E-143 dispersed
Sed03g0478 Sed-Chr3:2890524 Sed04g3824 Sed-Chr4:46695465 1.80E-122 dispersed
Sed04g3824 Sed-Chr4:46695465 Sed08g2502 Sed-Chr8:37827648 8.80E-69 dispersed
Sed05g1785 Sed-Chr5:31475627 Sed04g3824 Sed-Chr4:46695465 3.60E-46 transposed
Sed12g0977 Sed-Chr12:6108739 Sed04g3824 Sed-Chr4:46695465 6.60E-20 transposed
Sed04g0996 Sed-Chr4:11439070 Sed04g3824 Sed-Chr4:46695465 9.70E-222 wgd
Sed04g3824 Sed-Chr4:46695465 Sed05g2202 Sed-Chr5:34825792 6.50E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79104 PF07714 PK_Tyr_Ser-Thr 4.30E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3824 - - - 0.0