Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3825 ATGGATTCGCTTAAGAAATCTTTCAAAAGCAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCAGGCGGAGCCGGAAGCGAAATCAACTACGAGGAGCTTCCCATTCTTTTCGATCGCGAACCTCATTTAGATTGCACTGAGCTCGTTCTCAAGATGGATGATGGCAGTTCTTCGTTGGCTGTTTCGAGATCTCTGGACTCTGCCGCTACCGGCAGCAATGTTTGGCGGGAATCCAGGTATGATTTCTGGAACAATAATGATGGAATTGGAGTAGGAATTGAGGAAAATGATAGTAGGATTAGTGATGGCGGTGATAGAATTGAGGATCTATTTAAATTTGTACCGCGCGGTAGTAGTGTGGATGATCCGCCGACCAGATTGATTAGTGAGTTTCTTGATAAGCAGAGAATTAGAGGCGAAACGGCTTTGGATATGGATTTGGAAATGGAGGAGCTGCGGCTGGATAGGATTACAACTCCAATGGCGGAATCATCGTTGAATGGAACTTCTAAGGATCTTACAACTCCAGATTCGCCTGAAATTTCGAGCGATGAGTCGATTCGAAGGCGGATTAGGGACTCTTGCGATTTACAAGAAGAATCCAAAGTAGGAAAGCCGCCATTGCCAAAGTCTCGCCGCGAACATTGCCTAAAGGGCTCTGTTGATGAGGCTGCGAGGTGTTTATCTAACTCGTCTATTCATAGGGAGCTTTCGTTTCAGAGCAAATCTCATTCATGGAGGGAGAAAAGCAAGTCGAGATTGATAGATCCGCCTCCGGAACCAAACCGACTCTCCGGCCTCATTCCTAAATCGGGACAGCTACGATCAGGATTTCTCGGCAAAAATTACGACGACGACGATGATCCCTTTACGGAGGAGGATCTTCCAGTGGAGTTCAAAACTCGTAAGTTCAATGCCCTCACTGTGCTGCAATGGTTCAGTCTGATCTTAATCACTACTGCTTTAGGTTGTACTCTTTCAATTCCTTATTTGAGGGCAAAGAGCCTATGGGAGTTGGATATTTGGAAATGGGAGTTGATGATTTTGGTACTCATTTGTGGGCGATTGGTATCTGGTTGGTGGATTAGGATTGCAGTGTTTTTCATTGAGAGAAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAAGAGACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTCATTGCTTGGATTTTGTTGTTCAATAAGCGAGTTCAGAGTCAAACCAACATAATCATACTCAATTACGTGTGGAAAATTTTAGTTTGTCTCTTGGCAAGTACATTGCTTTGGCTAGTGAAAACCCTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTGAGTACATACTTTGATCGAATTCAGGAATCGTTGTTTAATCAATACGTAATCGAGACGCTCGCCGGGCCACCGCTGATTGAAATTCGGAAGAATGGGGAAGAAGAGGAGAGGATTGCTGATGAAGTGCAAAACTTACAGAATGCAGGAATTAGCATACCCCCTGACCTCAAGTCAGCAACGTTGCTATCTTCTCTAAAGAGTGAAAGGGGAATGTGCAGCGAGGGGGCTCAGAGAAGTTCTCGTGGTAAAAGCTCGAAACTCCCTCGAGCACTCGATAAAAATGGGAAGGATGGAATAACGATTGCCCACTTGCATAAACTTAATACGAAGAATGTATCTTCTTGGAATATGAAGAGATTGATGACCATAGTTCGATATGGTAGTATTTCTACATTGGATGAGCAGTTACGGGGGCCATGTCCTGATGATGAATCTGCTACAGAGATCAAAAGCGAACGTGAGGCGAAGGCTGCAGCCAAGAAGATTTTCCTCAACGTGGCTCGGCCAGGGTTTAAGTACATATACCTGGATGACTTAATGCGGTTCATGAAAGAAGATGAGGTTCTTAAAACAATGAGTCTATTTGAAGGAGCAACTGAAAGCCGGAGGATAAGCAAATCTTCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAGCGGAGAGCCCTTTCTTTAACATTGAATGATACCAAAACAGCTGTTGATAAACTGCATCACCTGGTGAATATCGTATTCGGCATCCTTATATTAATTGTGTGGCTTTTAGTACTAGGAATTGCCACCACCAAATTCTTCCTCTTGCTTAGTTCTCAGATGGTGCTTGTGGCATTCATTTTTGGGAACACGTTAAGGAACATATTTGAAGCAACCATCTTCTTGTTTGTCATGCATCCATTCGACGTCGGAGATCGATGTGAAATCGATGGAGCCCAGATGGTGGTGGAGGAGATGAACATCTTGACTACTGTGTTCTTGAGAGATGACAATATGAAGATTATAGTCCCAAATAGCATTCTTTCAACCAAATTTATCCACAACTACTATCGTAGTCCCAAAATGGGCGAATCTGTTGAATTCTCTGTTCATATTGCAACGCCAACTGACAAACTTGCGGCCATGAAACACAGAATCATAAGTTACATTGAAGGCCAAAAAGAACACTGGCAACCTTCCCCAATGTTTGTGTTCAAGAATATAGAAGGTTTAAATACGCTGAAATTGGCAATCTGGTTCTCACACACAATGAACCACCAGGACATAGGGGAGAGATGGGTTCGGAGGTCCGTCGTCGTCGAAGAGATCGTGAAGATCTGTCAAGAGCTTGACATTCAATACCGTCTGTTGCCTCTCGATATCAATATCCGTTCACTGCCTTCTTCTACACCCTCCATTGGCTTTCTCGGATAG 2769 43.55 MDSLKKSFKSNVSFKHTRKISAGGAGSEINYEELPILFDREPHLDCTELVLKMDDGSSSLAVSRSLDSAATGSNVWRESRYDFWNNNDGIGVGIEENDSRISDGGDRIEDLFKFVPRGSSVDDPPTRLISEFLDKQRIRGETALDMDLEMEELRLDRITTPMAESSLNGTSKDLTTPDSPEISSDESIRRRIRDSCDLQEESKVGKPPLPKSRREHCLKGSVDEAARCLSNSSIHRELSFQSKSHSWREKSKSRLIDPPPEPNRLSGLIPKSGQLRSGFLGKNYDDDDDPFTEEDLPVEFKTRKFNALTVLQWFSLILITTALGCTLSIPYLRAKSLWELDIWKWELMILVLICGRLVSGWWIRIAVFFIERNFLLRKRVLYFVYGVKRPVQNCLWLGLVLIAWILLFNKRVQSQTNIIILNYVWKILVCLLASTLLWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLAGPPLIEIRKNGEEEERIADEVQNLQNAGISIPPDLKSATLLSSLKSERGMCSEGAQRSSRGKSSKLPRALDKNGKDGITIAHLHKLNTKNVSSWNMKRLMTIVRYGSISTLDEQLRGPCPDDESATEIKSEREAKAAAKKIFLNVARPGFKYIYLDDLMRFMKEDEVLKTMSLFEGATESRRISKSSLKNWVVNAFRERRALSLTLNDTKTAVDKLHHLVNIVFGILILIVWLLVLGIATTKFFLLLSSQMVLVAFIFGNTLRNIFEATIFLFVMHPFDVGDRCEIDGAQMVVEEMNILTTVFLRDDNMKIIVPNSILSTKFIHNYYRSPKMGESVEFSVHIATPTDKLAAMKHRIISYIEGQKEHWQPSPMFVFKNIEGLNTLKLAIWFSHTMNHQDIGERWVRRSVVVEEIVKICQELDIQYRLLPLDINIRSLPSSTPSIGFLG 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46705640 46717044 + Sed0005070.1 Sed04g3825 712428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3825 922 Pfam Mechanosensitive ion channel, beta-domain 736 802 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3825 922 MobiDBLite consensus disorder prediction 159 215 - -
Sed04g3825 922 Gene3D - 752 801 IPR023408 -
Sed04g3825 922 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 137 914 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed04g3825 922 MobiDBLite consensus disorder prediction 522 548 - -
Sed04g3825 922 FunFam Predicted mechanosensitive ion channel 752 801 - -
Sed04g3825 922 PIRSF Memb_At2g17000 43 919 IPR016688 -
Sed04g3825 922 MobiDBLite consensus disorder prediction 183 215 - -
Sed04g3825 922 MobiDBLite consensus disorder prediction 161 182 - -
Sed04g3825 922 SUPERFAMILY Sm-like ribonucleoproteins 741 801 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3825 Sed-Chr4:46705640 Sed05g3520 Sed-Chr5:43835163 1.80E-185 dispersed
Sed01g0647 Sed-Chr1:4727690 Sed04g3825 Sed-Chr4:46705640 2.20E-281 wgd
Sed04g3825 Sed-Chr4:46705640 Sed05g2203 Sed-Chr5:34836664 0.00E+00 wgd
Sed04g3825 Sed-Chr4:46705640 Sed05g3519 Sed-Chr5:43835163 1.60E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3825 K22048 - csv:101207426 1274.23