Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3828 ATGAACAAGAGGCCCAGAATTGATGATTCCAATAAGTCTGTGCTCAATGTCTGGAAGCGCGAGCTCGGGGAGCTTTCCACCAGGAATTTCGCCCATCGTCTTGCTGCAGCCGAGGATCTCGTGCTCCGGCTTGATCTTTACAGGAAATTGGATAAGCACAAAGGTTGTGTGAATACTGTGAGCTTTAATGCTGCTGGTGACATTCTAGTATCAGGTTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAACCGGGCGTCATAAGATCTCTTTTCAGCCTGGTCATAATAACAATATTTTCCAAGCAAAAATCATGCCTTACACGGATGATCGAAGCATTGTGACTTGTGCTGCGGATGGGCAGGTGAGACATGCTCAGATTCTGGATTCTAAGGGAGGTGTGGAAACTTCATTACTTGGCAGTCATCAAGGGCGAGCTCATAAGTTGGCCGTTGAACCTGGGAGCCCTTATATTTTTTACACTTGTGGTGAAGATGGATTGGTGCAACATTTTGATCTGAGAACTGGGACTGGCATTGAGCTGTTCACTTGCCAATCAGTTGACAATATGGCAGGTTACATGCCAGCGATTCAGCTAAATGCAATTGCTATTGATCCAAGAAATCCAAATCTCTTTGTTGTTGCTGGTTCAGATGAGTATGCGCGACTGTATGATATTCGCAAGTATAAGGGGGAAGGATCAACTGATTTTGGTCTACCTGCAGACTGTTATTGCCCCCCTCACTTGATTGGTGACGAACAAGTGGGAATAACAGGATTAGCCTTCTCAGAGCTGAGTGAACTCCTTGTCTCATACAATGATGAATGTATATATCTCTTCAATAAGGATATGGGTTTGGGCCCAAACCCAAATCCAGCATATCCAGTATCAACAAGTAGTGATACAAGTGAAATGGGAGATGAAAAAGTTGAGAATGGTAGTCCACAGGTTTATAAAGGGCATAGAAACTGTGAGACAGTAAAAGGTGTCAATTTTTTTGGACCTAAATGTGAGTATGTCGTCAGCGGATCTGATTGTGGCAGGATATTTATATGGAGGAAAAAGGACGGAGTTCTAATCCGAGTCATGGAAGCAGATGAGGATGTGGTCAACTGCATTGAGCCCCATCCTCACTTGACCATGCTTGCTAGTAGTGGAATTGAAAATAACGTCAAGATATGGACTCCAAAAGCCCTTGAAAGGGCTATTCTGCCTAAGAAACTTGAAGTGAAACCGAAGCCTAGGGGATGGATGAACCGGTTAGCCTTACCAACAGAGGAACTGATGATGCAACTGTTTTCACTGCGCAGACAAAATTCAAGCTCGGAACGCCGTGGAGAAAACTCCACTGTAAGTAATGAGCTTCTAGAGTTGTTGTTCACATACTATAACAATGATGAGGGCGAGCATTCTTCAGATGACGACGATGGCGAGGACGAGGACGAGGACTCGTCAGATGATGAAGATGGTGATACTGCAGAAGATGAAGATGAAGATGATTGA 1506 44.42 MNKRPRIDDSNKSVLNVWKRELGELSTRNFAHRLAAAEDLVLRLDLYRKLDKHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGRHKISFQPGHNNNIFQAKIMPYTDDRSIVTCAADGQVRHAQILDSKGGVETSLLGSHQGRAHKLAVEPGSPYIFYTCGEDGLVQHFDLRTGTGIELFTCQSVDNMAGYMPAIQLNAIAIDPRNPNLFVVAGSDEYARLYDIRKYKGEGSTDFGLPADCYCPPHLIGDEQVGITGLAFSELSELLVSYNDECIYLFNKDMGLGPNPNPAYPVSTSSDTSEMGDEKVENGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGVLIRVMEADEDVVNCIEPHPHLTMLASSGIENNVKIWTPKALERAILPKKLEVKPKPRGWMNRLALPTEELMMQLFSLRRQNSSSERRGENSTVSNELLELLFTYYNNDEGEHSSDDDDGEDEDEDSSDDEDGDTAEDEDEDD 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46737176 46741951 + Sed0000019.1 Sed04g3828 712431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3828 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Sed04g3828 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SUPERFAMILY WD40 repeat-like 42 395 IPR036322 GO:0005515(InterPro)
Sed04g3828 501 Pfam WD domain, G-beta repeat 360 395 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 Pfam WD domain, G-beta repeat 317 353 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 MobiDBLite consensus disorder prediction 470 501 - -
Sed04g3828 501 SMART WD40_4 133 173 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 312 354 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 243 282 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 178 226 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 85 127 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 SMART WD40_4 357 396 IPR001680 GO:0005515(InterPro)
Sed04g3828 501 Gene3D - 38 398 IPR015943 GO:0005515(InterPro)
Sed04g3828 501 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 12 489 IPR045151 GO:0005737(PANTHER)|GO:0080008(PANTHER)
Sed04g3828 501 MobiDBLite consensus disorder prediction 296 317 - -
Sed04g3828 501 MobiDBLite consensus disorder prediction 463 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3828 K11804 - - csv:101212571 803.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0904 Sed-Chr1:6535279 Sed04g3828 Sed-Chr4:46737176 5.00E-121 dispersed
Sed01g0905 Sed-Chr1:6536049 Sed04g3828 Sed-Chr4:46737176 1.60E-87 dispersed
Sed04g3828 Sed-Chr4:46737176 Sed13g1550 Sed-Chr13:20668004 2.80E-18 dispersed
Sed04g3828 Sed-Chr4:46737176 Sed13g1549 Sed-Chr13:20668004 2.80E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57