Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3836 ATGGGTGTGGAGCTACACAATCACGATGCAGAGGAGGGAACGCTGGAGGTTGGCATGGAATATAGAACAGTTTCTGGTGTTGCTGGTCCTTTGGTTATTTTGGACAAAGTCAAGGGACCTAAGTTTCAAGAGATTGTTAATATTCGTCTAGGAGATGGATCGGTGAGGCGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTCCAGGTATTTGAAGGGACATCTGGAATTGATAACAAGTATACAACTGTGCAATTTACTGGAGAGGTTTTGAAAACTCCAGTTTCTTTGGATATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATTTTGCCCGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCCGAAGAGATGATACAGACTGGGATTTCTACCATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAAAGATCTTCTTGAGGGTGGTGAAGAGGATAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCATATGAATGTGGGAAGCACGTTCTCGTCATATTGACAGATATGAGTTCTTATGCCGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACCGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGCAAAGGATCCATCACCCAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACTCCCGATCTCACTGGCTATATTACCGAGGGACAGATCTACATCGATAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCCGATGTATCGAACCAGCTCTATGCAAATTATGCAATCGGGAAGGATGTTCAAGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTCTTGGACAAATTTGAGAGGAAATTTGTTGCTCAAGGAGCTTACGATACCCGAAACATTTTCCAATCACTGGATCTAGCATGGACTCTGCTTCGTATTTTCCCTCGTGAACTTCTCCACCGTATACCCGCAAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCTAATTGA 1467 44.04 MGVELHNHDAEEGTLEVGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSVRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSKDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46777489 46782746 - Sed0012495.2 Sed04g3836 712439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3836 488 Gene3D - 29 488 - -
Sed04g3836 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Sed04g3836 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524(InterPro)
Sed04g3836 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Sed04g3836 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
Sed04g3836 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Sed04g3836 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 486 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Sed04g3836 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Sed04g3836 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Sed04g3836 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Sed04g3836 488 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g3836 488 Pfam C-terminal domain of V and A type ATP synthase 383 482 - -
Sed04g3836 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Sed04g3836 488 CDD V_A-ATPase_B 92 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3836 Sed-Chr4:46777489 Sed05g2250 Sed-Chr5:35199328 2.00E-279 dispersed
Sed04g3835 Sed-Chr4:46777489 Sed04g3836 Sed-Chr4:46777489 2.50E-282 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3836 K02147 - csv:101211838 951.044