Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3837 ATGCTGTCGGAGTTGATGAACTATTTAAGGGCCTGTTTTCGGCCGAGCTCCGATCGGTATGCGGCGGGGGATATCAAGGGACGGCAGGACGGGCTGCTGTGGTACAAAGACCGTGGACAACACTTGAATGGTGAGTTCTCTATGTCTGTGGTTCAGGCTAACAATTTGCTTGAAGATCAAAGGCAGATTGAGTCAGGCAGTTTAAGCTCAGAGGAGTCTGGTCCAAGAGGGACATTTGTTGGTGTGTATGATGGCCATGGCGGGCCCGAGACTTCTCGGTATATCTGCGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCTGAGCAAGATTCAATGTCTGCCGATGTAATATGCAAGGCATTCCAAGCGACAGAAGAGGGTTTTCTTTCAATAGTTCGAAGACAATGGCCAACAAATCCACAAATTGCAGCTGTCGGTTCGTGCTGTCTAGTTGGTATAATCTGTAATGGTACCCTCTATGTTGCAAATCTAGGTGATTCGCGCGCGGTTTTGGGTAGAGCAGTGAAAGCAACCGGCGAGGTTTTAGCCATTCAATTATCAACAGAGCACAATGTTTGTAACGAATCTGTGAGGCAAGAGCTGCAGTCTTTGCACCCTGAAGACTCCCGAATTGTGGTTTTGAAGCATAATGTTTGGCGGGTGAAGGGGATAATACAGATTTCAAAATCTATAGGTGATGTGTACTTGAAAAAACCTGAGTTCAATAGAGAACCTCTGTATTTAAAGTTTCGAGTTCGGGAACCCTTCAAAAAGCCAATTTTGAGCGCTGAACCAGACATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTTATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCGACATAGTTCACAAGCATCCTCAAAATGGAAGTGCAAAAAGACTGGTCAAAACTGCTCTTCAATTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGACTTGAAGAAGATCGACCGTGGTGTTCGTCGCCATTTCCATGACGACATCACCGTGGTAGTTGTGTTTCTCGATACAAATCTGCTCTTTAGAGCCAGCTCCACTAAGAGCTTGAGTGTCTCACTACGAGGAGGCGGAGTCAACCGGCTTCCTAACTCATTAGCGCCTGGCACTACGCCCACTTAG 1173 46.04 MLSELMNYLRACFRPSSDRYAAGDIKGRQDGLLWYKDRGQHLNGEFSMSVVQANNLLEDQRQIESGSLSSEESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSADVICKAFQATEEGFLSIVRRQWPTNPQIAAVGSCCLVGIICNGTLYVANLGDSRAVLGRAVKATGEVLAIQLSTEHNVCNESVRQELQSLHPEDSRIVVLKHNVWRVKGIIQISKSIGDVYLKKPEFNREPLYLKFRVREPFKKPILSAEPDISETQLKPDDQFIIFASDGLWEHLSNQEAVDIVHKHPQNGSAKRLVKTALQLAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLLFRASSTKSLSVSLRGGGVNRLPNSLAPGTTPT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46784349 46788524 - Sed0003434.1 Sed04g3837 712440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3837 390 SMART PP2C_4 37 351 IPR001932 -
Sed04g3837 390 FunFam Phosphatase 2C family protein 34 363 - -
Sed04g3837 390 SUPERFAMILY PP2C-like 50 354 IPR036457 -
Sed04g3837 390 Pfam Protein phosphatase 2C 64 318 IPR001932 -
Sed04g3837 390 CDD PP2Cc 46 353 IPR001932 -
Sed04g3837 390 Gene3D - 33 360 IPR036457 -
Sed04g3837 390 PANTHER PROTEIN PHOSPHATASE 37 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g3837 390 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Sed04g3837 390 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3837 Sed-Chr4:46784349 Sed10g1033 Sed-Chr10:9117671 5.80E-165 dispersed
Sed01g0661 Sed-Chr1:4862227 Sed04g3837 Sed-Chr4:46784349 4.30E-176 wgd
Sed04g0978 Sed-Chr4:11370158 Sed04g3837 Sed-Chr4:46784349 3.90E-161 wgd
Sed04g3837 Sed-Chr4:46784349 Sed05g2248 Sed-Chr5:35186638 1.20E-202 wgd
Sed04g3837 Sed-Chr4:46784349 Sed05g3510 Sed-Chr5:43766552 3.90E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3837 - - - 0.0