Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3846 | ATGTCGAAAGAAGTGACCGAAGAGGGACAGTCCGGGCTGAGAAAGGACTACGTCGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCTTTTTACAGAGCCTTAATCGCCGAATTCATCGCCACCCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAACAGACCAAAATCTGCGACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATTAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGAGGAAGGTGTCACTGATAAGAGCGGTGGGGTACATGGTGGCTCAATGCGCCGGAGCCATCGCCGGCGTTGGGCTGGTTAAGGCGTTCATGAAGCATGATTATAACGGCCACGGCGGCGGAGCTAACTCCGTTAATGATGGTTACAATAAGGGAACTGCTCTTGGAGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGCGACTCTCACATTCCGGTGTTGGCTCCATTGCCTATCGGCTTTGCCGTGTTCATGGTTCATTTGGCCACCATTCCGATCACTGGCACCGGAATCAACCCGGCAAGGAGCTTTGGCGCCGCCGTGATCTACAACAATGAGAAAGCCTGGAACGACCACTGGATCTTTTGGGTCGGACCGTTCGTCGGGGCACTCGCGGCGGCCGCTTACCACCAGTACATTCTCCGGGCCGCCGCCATTAAAGCTTTGGGATCCTTCCGCAGCAACCCCACCAACTGA | 843 | 57.18 | MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKICDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIAGVGLVKAFMKHDYNGHGGGANSVNDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 46838222 | 46840703 | - | Sed0012079.1 | Sed04g3846 | 712449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3846 | 280 | Gene3D | Glycerol uptake facilitator protein. | 23 | 280 | IPR023271 | - | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 166 | 184 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 202 | 224 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 242 | 262 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 276 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Sed04g3846 | 280 | Pfam | Major intrinsic protein | 31 | 259 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | SUPERFAMILY | Aquaporin-like | 30 | 264 | IPR023271 | - | |
Sed04g3846 | 280 | FunFam | Probable aquaporin PIP1-2 | 23 | 278 | - | - | |
Sed04g3846 | 280 | NCBIfam | MIP family channel protein | 42 | 258 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g3846 | 280 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Sed04g3846 | 280 | CDD | MIP | 38 | 262 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3846 | Sed-Chr4:46838222 | Sed06g2041 | Sed-Chr6:44490237 | 2.80E-121 | dispersed | |
Sed02g0256 | Sed-Chr2:37672131 | Sed04g3846 | Sed-Chr4:46838222 | 2.70E-84 | transposed | |
Sed04g3846 | Sed-Chr4:46838222 | Sed05g3504 | Sed-Chr5:43714884 | 1.50E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3846 | K09872 | - | csv:101209627 | 545.814 |