Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3846 ATGTCGAAAGAAGTGACCGAAGAGGGACAGTCCGGGCTGAGAAAGGACTACGTCGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCTTTTTACAGAGCCTTAATCGCCGAATTCATCGCCACCCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAACAGACCAAAATCTGCGACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATTAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGAGGAAGGTGTCACTGATAAGAGCGGTGGGGTACATGGTGGCTCAATGCGCCGGAGCCATCGCCGGCGTTGGGCTGGTTAAGGCGTTCATGAAGCATGATTATAACGGCCACGGCGGCGGAGCTAACTCCGTTAATGATGGTTACAATAAGGGAACTGCTCTTGGAGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGCGACTCTCACATTCCGGTGTTGGCTCCATTGCCTATCGGCTTTGCCGTGTTCATGGTTCATTTGGCCACCATTCCGATCACTGGCACCGGAATCAACCCGGCAAGGAGCTTTGGCGCCGCCGTGATCTACAACAATGAGAAAGCCTGGAACGACCACTGGATCTTTTGGGTCGGACCGTTCGTCGGGGCACTCGCGGCGGCCGCTTACCACCAGTACATTCTCCGGGCCGCCGCCATTAAAGCTTTGGGATCCTTCCGCAGCAACCCCACCAACTGA 843 57.18 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKICDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIAGVGLVKAFMKHDYNGHGGGANSVNDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46838222 46840703 - Sed0012079.1 Sed04g3846 712449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3846 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Sed04g3846 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Sed04g3846 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Sed04g3846 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Sed04g3846 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3846 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Sed04g3846 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3846 Sed-Chr4:46838222 Sed06g2041 Sed-Chr6:44490237 2.80E-121 dispersed
Sed02g0256 Sed-Chr2:37672131 Sed04g3846 Sed-Chr4:46838222 2.70E-84 transposed
Sed04g3846 Sed-Chr4:46838222 Sed05g3504 Sed-Chr5:43714884 1.50E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3846 K09872 - csv:101209627 545.814